Wall clock time and date at job start Mon Mar 30 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76207 * 100.00204 * 2 1 4 4 C 1.36582 * 125.60892 * 180.02562 * 3 2 1 5 5 C 1.39565 * 107.20830 * 179.97438 * 4 3 2 6 6 C 1.38137 * 106.74395 * 0.02562 * 5 4 3 7 7 C 1.41364 * 126.02280 * 179.97438 * 6 5 4 8 8 O 1.21742 * 119.99832 * 359.97438 * 7 6 5 9 9 O 1.35018 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.42905 * 116.99922 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47147 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99720 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99710 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47282 * 90.00555 * 17 15 13 19 19 H 1.48497 * 109.47337 * 210.00504 * 17 15 13 20 20 H 1.48505 * 109.47194 * 330.00302 * 17 15 13 21 21 O 1.34152 * 125.60153 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47162 * 59.99833 * 1 2 3 23 23 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46959 * 300.00056 * 1 2 3 25 25 H 1.07998 * 126.39779 * 359.97438 * 4 3 2 26 26 H 1.07994 * 126.63336 * 179.73736 * 5 4 3 27 27 H 1.08997 * 109.46857 * 300.00401 * 10 9 7 28 28 H 1.09006 * 109.46813 * 60.00200 * 10 9 7 29 29 H 1.09001 * 109.47583 * 300.00476 * 11 10 9 30 30 H 1.09006 * 109.47051 * 60.00460 * 11 10 9 31 31 H 1.08997 * 109.46921 * 300.00607 * 12 11 10 32 32 H 1.08998 * 109.46814 * 60.00079 * 12 11 10 33 33 H 0.96992 * 119.99556 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.3477 2.3256 -0.0005 5 6 3.1438 3.7063 -0.0009 6 6 1.7771 3.9068 0.0000 7 6 1.1205 5.1586 0.0004 8 8 1.7714 6.1874 0.0006 9 8 -0.2286 5.2134 0.0008 10 6 -0.8252 6.5120 0.0018 11 6 -2.3488 6.3732 0.0014 12 6 -2.9876 7.7635 0.0031 13 6 -4.4884 7.6267 0.0034 14 1 -4.9413 6.6463 0.0028 15 6 -5.2832 8.7534 0.0043 16 7 -6.5930 8.6340 0.0050 17 14 -4.4998 10.4491 0.0061 18 1 -4.2921 10.8999 -1.3935 19 1 -5.3930 11.4063 0.7070 20 1 -3.1916 10.3893 0.7062 21 8 1.1774 2.6938 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3013 1.8186 -0.0006 26 1 3.9070 4.4703 0.0026 27 1 -0.5097 7.0560 0.8921 28 1 -0.5101 7.0572 -0.8879 29 1 -2.6640 5.8292 -0.8891 30 1 -2.6643 5.8277 0.8909 31 1 -2.6724 8.3069 0.8938 32 1 -2.6722 8.3093 -0.8861 33 1 -7.1521 9.4266 0.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732861960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:01 Heat of formation + Delta-G solvation = -97.499745 kcal Electronic energy + Delta-G solvation = -17485.324707 eV Core-core repulsion = 14410.449663 eV Total energy + Delta-G solvation = -3074.875045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.82191 -41.52573 -38.13226 -35.97842 -34.39001 -33.91303 -31.75696 -29.97620 -29.40234 -26.10061 -24.37222 -23.11033 -22.18400 -21.75777 -19.91309 -19.07278 -18.79840 -18.22008 -17.76585 -17.25508 -16.31364 -16.05738 -15.67218 -14.99137 -14.79272 -14.63761 -14.56419 -14.31902 -14.20610 -14.03835 -13.79812 -13.19804 -12.89938 -12.66805 -12.38149 -12.09329 -12.00239 -11.79069 -11.71081 -11.43876 -11.41245 -11.38465 -10.78822 -10.77673 -8.58262 -8.31624 -6.36987 -0.58432 -0.04268 0.76109 0.98305 1.36631 1.38159 1.49538 1.50828 1.73932 2.21753 2.35011 3.03522 3.65243 3.71728 3.95818 3.98390 4.15360 4.16627 4.20492 4.31428 4.36481 4.61871 4.69960 4.72761 4.83436 4.92442 5.09689 5.17590 5.40603 5.45004 5.45877 5.60253 6.23814 6.47919 6.70618 7.27585 8.85038 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.003315 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.343295 B = 8445.305281 C = 9349.597905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S 0.028 5.972 3 C 0.003 3.997 4 C -0.194 4.194 5 C -0.059 4.059 6 C -0.115 4.115 7 C 0.548 3.452 8 O -0.516 6.516 9 O -0.353 6.353 10 C 0.072 3.928 11 C -0.092 4.092 12 C -0.008 4.008 13 C -0.536 4.536 14 H 0.034 0.966 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.245 1.245 21 O -0.157 6.157 22 H 0.089 0.911 23 H 0.139 0.861 24 H 0.089 0.911 25 H 0.199 0.801 26 H 0.189 0.811 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -17.585 0.000 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.267 5.733 3 C -0.162 4.162 4 C -0.221 4.221 5 C -0.079 4.079 6 C -0.169 4.169 7 C 0.396 3.604 8 O -0.409 6.409 9 O -0.269 6.269 10 C -0.002 4.002 11 C -0.130 4.130 12 C -0.046 4.046 13 C -0.574 4.574 14 H 0.052 0.948 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.168 1.168 21 O -0.055 6.055 22 H 0.108 0.892 23 H 0.158 0.842 24 H 0.108 0.892 25 H 0.216 0.784 26 H 0.206 0.794 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.976 -18.259 0.004 29.348 hybrid contribution -1.297 1.983 -0.018 2.369 sum 21.678 -16.277 -0.015 27.109 Atomic orbital electron populations 1.23823 0.93124 1.09294 1.07121 1.85908 1.08478 0.88023 1.90889 1.25767 0.90634 0.95438 1.04336 1.21931 0.98324 0.92420 1.09378 1.22570 0.92955 0.97950 0.94471 1.19995 0.92573 0.82371 1.21951 1.18152 0.81141 0.87485 0.73595 1.90945 1.66962 1.34516 1.48436 1.86252 1.21174 1.35905 1.83570 1.22910 0.93543 0.80815 1.02924 1.21333 0.90197 0.98999 1.02426 1.19445 0.93918 0.93831 0.97371 1.21399 0.91522 0.93547 1.50914 0.94772 1.26020 0.95145 1.04105 0.93931 1.70062 1.05360 1.31270 1.52328 0.85643 0.79423 0.78173 0.79362 1.18999 1.20850 1.16834 1.84390 1.35716 1.13936 1.71427 0.89201 0.84234 0.89205 0.78370 0.79357 0.90821 0.90755 0.92001 0.92031 0.95438 0.95538 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.08 113.37 1.14 -0.75 16 2 S 0.03 0.36 22.90 -56.49 -1.29 -0.93 16 3 C 0.00 0.05 7.29 67.43 0.49 0.54 16 4 C -0.19 -3.04 10.82 22.20 0.24 -2.80 16 5 C -0.06 -1.15 10.57 22.57 0.24 -0.91 16 6 C -0.12 -3.06 6.99 23.02 0.16 -2.90 16 7 C 0.55 17.48 7.72 68.59 0.53 18.00 16 8 O -0.52 -17.80 16.57 19.04 0.32 -17.49 16 9 O -0.35 -12.15 10.10 -56.67 -0.57 -12.72 16 10 C 0.07 2.51 5.38 71.98 0.39 2.90 16 11 C -0.09 -3.71 5.52 30.59 0.17 -3.55 16 12 C -0.01 -0.39 4.04 29.85 0.12 -0.26 16 13 C -0.54 -31.23 9.66 25.60 0.25 -30.98 16 14 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 15 C 0.00 0.29 5.47 84.65 0.46 0.76 16 16 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 17 Si 0.95 44.28 27.47 68.60 1.88 46.16 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 21 O -0.16 -3.97 10.12 -7.71 -0.08 -4.05 16 22 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.14 0.85 8.14 -2.40 -0.02 0.83 16 24 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 26 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 28 H 0.07 2.49 8.13 -2.38 -0.02 2.47 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 32 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -70.55 309.54 5.80 -64.75 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.05 Total: 3.88 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.19 Total: -19.96 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.30 Total: -59.63 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.33 Total: -34.26 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.29 Total: -0.93 kcal Total: -70.55 5.80 -64.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732861960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.752 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds