Wall clock time and date at job start Mon Mar 30 2020 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81399 * 109.47594 * 2 1 4 4 O 1.42100 * 108.58108 * 65.50759 * 3 2 1 5 5 O 1.42105 * 108.57588 * 294.48513 * 3 2 1 6 6 C 1.81399 * 101.92333 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.46912 * 179.97438 * 6 3 2 8 8 C 1.38305 * 119.93408 * 89.99665 * 7 6 3 9 9 C 1.38101 * 120.07071 * 179.97438 * 8 7 6 10 10 C 1.38876 * 119.92956 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06861 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53840 * 11 10 9 13 13 H 1.08003 * 120.00029 * 354.94359 * 12 11 10 14 14 C 1.38659 * 120.00122 * 174.94542 * 12 11 10 15 15 N 1.31558 * 119.99705 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00035 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47181 * 89.99980 * 16 14 12 18 18 H 1.48498 * 109.47260 * 210.00361 * 16 14 12 19 19 H 1.48502 * 109.47130 * 330.00179 * 16 14 12 20 20 C 1.38880 * 119.86555 * 0.27954 * 10 9 8 21 21 C 1.38108 * 119.92520 * 359.40189 * 20 10 9 22 22 H 1.08993 * 109.47521 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47128 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.47176 * 60.00044 * 1 2 3 25 25 H 1.08998 * 109.47128 * 239.99516 * 2 1 3 26 26 H 1.09010 * 109.46930 * 119.99938 * 2 1 3 27 27 H 1.08986 * 109.47344 * 59.99504 * 6 3 2 28 28 H 1.09005 * 109.46818 * 299.99295 * 6 3 2 29 29 H 1.07999 * 119.96326 * 0.02562 * 8 7 6 30 30 H 1.07997 * 120.03156 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99350 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.04097 * 179.72435 * 20 10 9 33 33 H 1.08003 * 119.96536 * 180.32007 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3233 1.2257 5 8 1.7594 2.3231 -1.2259 6 6 3.9330 1.4718 -0.0008 7 6 4.6177 2.8142 -0.0015 8 6 4.9317 3.4294 1.1967 9 6 5.5597 4.6594 1.1993 10 6 5.8752 5.2789 -0.0029 11 8 6.4929 6.4877 -0.0036 12 6 6.8757 6.9802 1.1917 13 1 6.6150 6.4571 2.0999 14 6 7.6041 8.1584 1.2550 15 7 7.9780 8.6386 2.4214 16 14 8.0557 9.0628 -0.3157 17 1 6.9846 10.0345 -0.6528 18 1 9.3371 9.7871 -0.1189 19 1 8.2045 8.0859 -1.4242 20 6 5.5529 4.6615 -1.2045 21 6 4.9309 3.4285 -1.2004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 4.2253 0.9148 -0.8908 28 1 4.2260 0.9146 0.8891 29 1 4.6864 2.9470 2.1313 30 1 5.8050 5.1391 2.1353 31 1 8.4879 9.4626 2.4656 32 1 5.7930 5.1427 -2.1410 33 1 4.6846 2.9454 -2.1345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743041260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:14 Heat of formation + Delta-G solvation = -76.108361 kcal Electronic energy + Delta-G solvation = -18087.400814 eV Core-core repulsion = 15013.453369 eV Total energy + Delta-G solvation = -3073.947445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32744 -37.03951 -36.84519 -35.87460 -33.34829 -32.63946 -31.67029 -30.36575 -26.94276 -25.09207 -23.97550 -22.22520 -20.73177 -18.79450 -18.01104 -17.39839 -16.93478 -16.19944 -15.96130 -15.02737 -14.80857 -14.49879 -14.16968 -13.89595 -13.74884 -13.36750 -13.04311 -12.76288 -12.71587 -12.29481 -12.11255 -11.94326 -11.91803 -11.86593 -11.78388 -11.24076 -11.01654 -10.79521 -10.69845 -10.31034 -10.21633 -9.48318 -8.93562 -8.38435 -7.43172 -6.50388 -4.16010 -0.06860 2.03896 2.05925 2.82943 3.18931 3.22120 3.35863 3.67573 3.95905 4.17333 4.35838 4.44716 4.48045 4.67451 4.78658 4.92023 4.94363 5.02611 5.35175 5.38802 5.50736 5.54261 5.62934 5.66055 6.03169 6.18429 6.42741 6.66712 6.89225 7.04098 7.16594 7.47735 7.70705 7.93459 8.83646 9.43725 10.56441 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046830 B = 0.004031 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.767788 B = 6943.718474 C = 7156.901891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.626 4.626 3 S 2.399 3.601 4 O -0.935 6.935 5 O -0.937 6.937 6 C -0.529 4.529 7 C -0.193 4.193 8 C -0.051 4.051 9 C -0.222 4.222 10 C 0.169 3.831 11 O -0.208 6.208 12 C -0.391 4.391 13 H 0.109 0.891 14 C 0.065 3.935 15 N -0.872 5.872 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.258 1.258 20 C -0.192 4.192 21 C -0.055 4.055 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.281 0.719 32 H 0.123 0.877 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -17.229 -5.145 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.753 4.753 3 S 2.582 3.418 4 O -0.932 6.932 5 O -0.934 6.934 6 C -0.658 4.658 7 C -0.197 4.197 8 C -0.070 4.070 9 C -0.241 4.241 10 C 0.115 3.885 11 O -0.112 6.112 12 C -0.467 4.467 13 H 0.127 0.873 14 C -0.139 4.139 15 N -0.509 5.509 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.182 1.182 20 C -0.211 4.211 21 C -0.075 4.075 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.337 -16.150 -5.193 19.364 hybrid contribution 0.754 -0.436 -0.338 0.934 sum -8.583 -16.586 -5.531 19.478 Atomic orbital electron populations 1.21486 0.90748 1.04424 1.03726 1.30339 1.07358 1.26582 1.10988 1.09138 0.79028 0.77902 0.75704 1.93569 1.81405 1.72751 1.45498 1.93558 1.81465 1.72820 1.45555 1.28922 1.22112 1.03748 1.10976 1.18342 1.11550 0.95245 0.94533 1.20751 0.95241 0.94521 0.96485 1.21277 1.06555 0.97306 0.98967 1.19208 0.90951 0.84887 0.93460 1.83568 1.65428 1.28085 1.34096 1.20840 1.34666 1.08330 0.82818 0.87334 1.24505 0.95098 0.96016 0.98320 1.69645 1.35961 1.21512 1.23808 0.86158 0.78084 0.79912 0.82658 1.19690 1.20680 1.18240 1.20204 1.07852 0.96763 0.96304 1.20588 0.96027 0.94264 0.96579 0.90494 0.90901 0.90927 0.85382 0.85349 0.85139 0.85111 0.86418 0.84350 0.90834 0.85880 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.92 37.16 0.37 -0.77 16 2 C -0.63 -4.53 6.52 37.16 0.24 -4.29 16 3 S 2.40 28.93 4.70 -107.50 -0.51 28.43 16 4 O -0.94 -14.94 18.10 -57.83 -1.05 -15.99 16 5 O -0.94 -14.59 18.10 -57.83 -1.05 -15.64 16 6 C -0.53 -5.77 5.93 36.01 0.21 -5.55 16 7 C -0.19 -3.18 5.14 -104.57 -0.54 -3.72 16 8 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 9 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 10 C 0.17 3.89 6.65 -39.11 -0.26 3.63 16 11 O -0.21 -5.42 8.59 0.05 0.00 -5.42 16 12 C -0.39 -10.87 9.95 30.89 0.31 -10.57 16 13 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 14 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 15 N -0.87 -24.80 13.96 55.48 0.77 -24.02 16 16 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.19 -3.80 9.99 -39.39 -0.39 -4.20 16 21 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.13 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.13 1.05 8.09 -51.92 -0.42 0.63 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.14 3.09 5.64 -52.49 -0.30 2.79 16 31 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -34.32 301.97 -7.36 -41.68 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.94 Total: 1.52 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -1.28 Total: -31.55 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.77 Total: -24.02 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.09 Total: -37.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Atomic # 16 Polarization: 28.93 SS G_CDS: -0.51 Total: 28.43 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.32 -7.36 -41.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743041260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.432 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds