Wall clock time and date at job start Mon Mar 30 2020 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81399 * 109.47594 * 2 1 4 4 O 1.42100 * 108.58108 * 65.50759 * 3 2 1 5 5 O 1.42105 * 108.57588 * 294.48513 * 3 2 1 6 6 C 1.81399 * 101.92333 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.46912 * 179.97438 * 6 3 2 8 8 C 1.38305 * 119.93408 * 89.99665 * 7 6 3 9 9 C 1.38101 * 120.07071 * 179.97438 * 8 7 6 10 10 C 1.38876 * 119.92956 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06861 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53840 * 11 10 9 13 13 H 1.08003 * 120.00029 * 354.94359 * 12 11 10 14 14 C 1.38659 * 120.00122 * 174.94542 * 12 11 10 15 15 N 1.31558 * 119.99705 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00035 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47181 * 89.99980 * 16 14 12 18 18 H 1.48498 * 109.47260 * 210.00361 * 16 14 12 19 19 H 1.48502 * 109.47130 * 330.00179 * 16 14 12 20 20 C 1.38880 * 119.86555 * 0.27954 * 10 9 8 21 21 C 1.38108 * 119.92520 * 359.40189 * 20 10 9 22 22 H 1.08993 * 109.47521 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47128 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.47176 * 60.00044 * 1 2 3 25 25 H 1.08998 * 109.47128 * 239.99516 * 2 1 3 26 26 H 1.09010 * 109.46930 * 119.99938 * 2 1 3 27 27 H 1.08986 * 109.47344 * 59.99504 * 6 3 2 28 28 H 1.09005 * 109.46818 * 299.99295 * 6 3 2 29 29 H 1.07999 * 119.96326 * 0.02562 * 8 7 6 30 30 H 1.07997 * 120.03156 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99350 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.04097 * 179.72435 * 20 10 9 33 33 H 1.08003 * 119.96536 * 180.32007 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3233 1.2257 5 8 1.7594 2.3231 -1.2259 6 6 3.9330 1.4718 -0.0008 7 6 4.6177 2.8142 -0.0015 8 6 4.9317 3.4294 1.1967 9 6 5.5597 4.6594 1.1993 10 6 5.8752 5.2789 -0.0029 11 8 6.4929 6.4877 -0.0036 12 6 6.8757 6.9802 1.1917 13 1 6.6150 6.4571 2.0999 14 6 7.6041 8.1584 1.2550 15 7 7.9780 8.6386 2.4214 16 14 8.0557 9.0628 -0.3157 17 1 6.9846 10.0345 -0.6528 18 1 9.3371 9.7871 -0.1189 19 1 8.2045 8.0859 -1.4242 20 6 5.5529 4.6615 -1.2045 21 6 4.9309 3.4285 -1.2004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 4.2253 0.9148 -0.8908 28 1 4.2260 0.9146 0.8891 29 1 4.6864 2.9470 2.1313 30 1 5.8050 5.1391 2.1353 31 1 8.4879 9.4626 2.4656 32 1 5.7930 5.1427 -2.1410 33 1 4.6846 2.9454 -2.1345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743041260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:14 Heat of formation + Delta-G solvation = -101.869044 kcal Electronic energy + Delta-G solvation = -18088.517881 eV Core-core repulsion = 15013.453369 eV Total energy + Delta-G solvation = -3075.064512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99201 -38.66984 -37.89872 -36.91934 -34.58297 -33.94152 -33.08222 -31.91888 -28.42585 -26.79678 -24.73818 -23.81610 -22.25434 -19.90682 -19.73228 -19.17566 -17.80242 -17.15650 -17.10759 -16.63877 -16.15656 -15.88640 -15.65823 -15.27912 -15.15724 -14.50602 -14.39321 -14.15053 -13.99348 -13.39286 -13.35826 -13.32494 -13.01136 -12.93254 -12.81404 -12.62345 -12.46983 -12.31545 -11.97626 -11.82630 -11.35388 -11.23809 -10.89004 -9.92312 -9.06183 -8.53902 -6.27208 -0.97477 0.46654 0.54600 1.30479 1.35109 1.50567 1.97026 2.25824 2.66288 2.82071 2.96577 3.09656 3.15804 3.64588 3.83112 3.86385 4.02034 4.07703 4.27708 4.45899 4.47227 4.61017 4.69450 4.78642 4.89001 4.91172 5.14351 5.15287 5.28025 5.45657 5.55750 5.71387 5.82865 6.12775 6.79418 7.50484 8.57396 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046830 B = 0.004031 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.767788 B = 6943.718474 C = 7156.901891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.588 4.588 3 S 2.388 3.612 4 O -0.988 6.988 5 O -0.982 6.982 6 C -0.533 4.533 7 C -0.173 4.173 8 C -0.062 4.062 9 C -0.242 4.242 10 C 0.128 3.872 11 O -0.238 6.238 12 C -0.405 4.405 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.265 1.265 19 H -0.261 1.261 20 C -0.195 4.195 21 C -0.058 4.058 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.168 0.832 26 H 0.164 0.836 27 H 0.178 0.822 28 H 0.169 0.831 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.286 0.714 32 H 0.137 0.863 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -21.555 -7.252 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.720 4.720 3 S 2.577 3.423 4 O -0.986 6.986 5 O -0.979 6.979 6 C -0.662 4.662 7 C -0.175 4.175 8 C -0.081 4.081 9 C -0.261 4.261 10 C 0.078 3.922 11 O -0.145 6.145 12 C -0.481 4.481 13 H 0.100 0.900 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.185 1.185 20 C -0.214 4.214 21 C -0.077 4.077 22 H 0.125 0.875 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.185 0.815 26 H 0.182 0.818 27 H 0.196 0.804 28 H 0.187 0.813 29 H 0.162 0.838 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.559 -20.448 -7.305 24.145 hybrid contribution 0.824 0.368 0.278 0.945 sum -9.735 -20.080 -7.027 23.396 Atomic orbital electron populations 1.21700 0.91214 1.06114 1.03197 1.30029 1.06705 1.20478 1.14812 1.08881 0.79201 0.80328 0.73853 1.93521 1.82172 1.75841 1.47029 1.93512 1.82085 1.75714 1.46614 1.29057 1.20659 1.01069 1.15415 1.18980 1.08207 0.97064 0.93256 1.21130 0.94688 0.93404 0.98918 1.21334 1.07892 0.99014 0.97863 1.19762 0.92206 0.85013 0.95260 1.83515 1.68252 1.30113 1.32657 1.20753 1.35448 1.08859 0.83055 0.90020 1.25313 0.95119 0.96730 1.01534 1.69727 1.37971 1.22609 1.25645 0.85203 0.78421 0.78521 0.78492 1.19137 1.18951 1.18485 1.20590 1.07415 0.97765 0.95630 1.21177 0.94501 0.93134 0.98839 0.87504 0.91817 0.91520 0.81458 0.81834 0.80448 0.81275 0.83834 0.86799 0.90397 0.84542 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.92 71.98 0.71 -1.10 16 2 C -0.59 -4.76 6.52 71.98 0.47 -4.29 16 3 S 2.39 48.73 4.70 -56.49 -0.27 48.47 16 4 O -0.99 -30.02 18.10 -127.37 -2.31 -32.33 16 5 O -0.98 -28.05 18.10 -127.37 -2.30 -30.35 16 6 C -0.53 -8.58 5.93 71.24 0.42 -8.15 16 7 C -0.17 -5.14 5.14 -19.83 -0.10 -5.24 16 8 C -0.06 -2.24 9.69 22.25 0.22 -2.02 16 9 C -0.24 -11.02 9.17 22.39 0.21 -10.82 16 10 C 0.13 6.15 6.65 22.58 0.15 6.30 16 11 O -0.24 -13.20 8.59 -22.72 -0.20 -13.39 16 12 C -0.41 -24.26 9.95 67.92 0.68 -23.58 16 13 H 0.08 5.12 5.44 -2.91 -0.02 5.11 16 14 C 0.01 0.71 5.49 84.83 0.47 1.17 16 15 N -0.92 -55.29 13.96 21.61 0.30 -54.99 16 16 Si 0.97 45.72 28.62 68.60 1.96 47.68 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 20 C -0.19 -7.65 9.99 22.39 0.22 -7.43 16 21 C -0.06 -1.81 9.69 22.25 0.22 -1.59 16 22 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.18 1.31 8.08 -2.40 -0.02 1.29 16 28 H 0.17 1.55 8.09 -2.39 -0.02 1.53 16 29 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.11 5.65 5.64 -2.91 -0.02 5.63 16 31 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -83.27 301.97 1.96 -81.31 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.11 Total: 10.37 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 3.66 Total: -56.76 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.30 Total: -54.99 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -4.81 Total: -76.07 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.96 Total: 47.68 kcal Atomic # 16 Polarization: 48.73 SS G_CDS: -0.27 Total: 48.47 kcal Total: -83.27 1.96 -81.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743041260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.557 kcal (2) G-P(sol) polarization free energy of solvation -83.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds