Wall clock time and date at job start Mon Mar 30 2020 01:00:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3
5 5 N 1.31936 * 119.01019 * 299.72956 * 4 2 1
6 6 C 1.32163 * 121.07817 * 179.71422 * 5 4 2
7 7 C 1.38954 * 119.12966 * 0.54570 * 6 5 4
8 8 Cl 1.73599 * 120.88877 * 179.71053 * 7 6 5
9 9 C 1.39746 * 118.21566 * 359.73288 * 7 6 5
10 10 C 1.48164 * 120.56585 * 179.97438 * 9 7 6
11 11 O 1.21451 * 119.99966 * 0.02562 * 10 9 7
12 12 O 1.34655 * 119.99614 * 180.02562 * 10 9 7
13 13 C 1.34789 * 116.99867 * 180.02562 * 12 10 9
14 14 H 1.08000 * 120.00073 * 359.97438 * 13 12 10
15 15 C 1.38892 * 119.99961 * 179.97438 * 13 12 10
16 16 N 1.31365 * 120.00191 * 359.97438 * 15 13 12
17 17 Si 1.86803 * 119.99910 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46910 * 60.00316 * 17 15 13
19 19 H 1.48507 * 109.47087 * 179.97438 * 17 15 13
20 20 H 1.48495 * 109.47201 * 299.99848 * 17 15 13
21 21 N 1.31504 * 119.01621 * 119.99770 * 4 2 1
22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1
27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1
28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1
29 29 H 1.07997 * 120.43415 * 180.25455 * 6 5 4
30 30 H 0.97000 * 120.00079 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0324 -0.7105 1.2305
5 7 1.7062 -0.2399 2.4191
6 6 2.1195 -0.8338 3.5250
7 6 2.9197 -1.9656 3.4264
8 17 3.4944 -2.7774 4.8492
9 6 3.2498 -2.4323 2.1512
10 6 4.1003 -3.6342 1.9856
11 8 4.5165 -4.2229 2.9629
12 8 4.4117 -4.0737 0.7515
13 6 5.1884 -5.1723 0.6710
14 1 5.5318 -5.6580 1.5724
15 6 5.5472 -5.6797 -0.5711
16 7 5.1291 -5.0892 -1.6676
17 14 6.6243 -7.2019 -0.6826
18 1 5.9441 -8.3396 -0.0131
19 1 6.8607 -7.5376 -2.1098
20 1 7.9237 -6.9389 -0.0136
21 7 2.7871 -1.7779 1.0873
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 -1.0277 -0.0005
25 1 1.8934 -0.5138 -0.8899
26 1 1.6768 1.9562 0.8900
27 1 3.1300 1.4424 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.8429 -0.4420 4.4926
30 1 5.3794 -5.4438 -2.5351
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000744674055.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:00:01
Heat of formation + Delta-G solvation = -55.670948 kcal
Electronic energy + Delta-G solvation = -18085.098957 eV
Core-core repulsion = 14906.453696 eV
Total energy + Delta-G solvation = -3178.645262 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.53657 -40.89810 -38.04762 -37.30275 -36.46104 -35.19888 -34.39055 -32.10492
-28.32964 -28.03897 -26.62916 -25.64775 -23.42138 -21.41851 -20.06377 -19.55132
-18.80006 -17.51234 -17.10190 -17.09146 -16.33874 -16.23780 -15.99455 -15.15769
-15.06365 -14.58706 -14.12083 -13.70237 -13.31847 -13.17812 -13.12893 -12.90091
-12.62265 -12.47428 -12.19903 -12.15244 -12.12069 -12.06130 -12.05225 -11.86772
-11.32174 -10.78105 -10.38025 -10.37092 -8.63704 -6.39833 -0.95804 -0.39153
0.77161 1.29786 1.31452 1.49062 1.59976 1.86381 2.29984 2.44391
2.63113 2.84423 2.93957 3.30122 3.57007 3.92493 4.07949 4.16873
4.46944 4.61450 4.82888 4.84589 4.95951 4.96419 5.06052 5.13229
5.34102 5.37372 5.51347 5.69416 6.41306 6.71721 6.77861 7.60369
8.55458
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.017622 B = 0.006399 C = 0.004845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.542237 B = 4374.524208 C = 5777.310474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.033 4.033
3 C -0.132 4.132
4 C 0.316 3.684
5 N -0.481 5.481
6 C 0.184 3.816
7 C -0.116 4.116
8 Cl -0.003 7.003
9 C 0.160 3.840
10 C 0.420 3.580
11 O -0.535 6.535
12 O -0.209 6.209
13 C -0.419 4.419
14 H 0.093 0.907
15 C -0.001 4.001
16 N -0.885 5.885
17 Si 1.024 2.976
18 H -0.258 1.258
19 H -0.258 1.258
20 H -0.258 1.258
21 N -0.497 5.497
22 H 0.093 0.907
23 H 0.074 0.926
24 H 0.040 0.960
25 H 0.086 0.914
26 H 0.074 0.926
27 H 0.040 0.960
28 H 0.093 0.907
29 H 0.234 0.766
30 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.943 11.213 5.789 14.911
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.054 4.054
3 C -0.190 4.190
4 C 0.049 3.951
5 N -0.195 5.195
6 C 0.015 3.985
7 C -0.148 4.148
8 Cl 0.026 6.974
9 C 0.015 3.985
10 C 0.267 3.733
11 O -0.432 6.432
12 O -0.114 6.114
13 C -0.494 4.494
14 H 0.111 0.889
15 C -0.204 4.204
16 N -0.521 5.521
17 Si 0.842 3.158
18 H -0.183 1.183
19 H -0.181 1.181
20 H -0.182 1.182
21 N -0.214 5.214
22 H 0.111 0.889
23 H 0.093 0.907
24 H 0.059 0.941
25 H 0.104 0.896
26 H 0.093 0.907
27 H 0.059 0.941
28 H 0.111 0.889
29 H 0.250 0.750
30 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -8.060 11.391 5.070 14.847
hybrid contribution 1.030 -1.461 0.735 1.932
sum -7.030 9.931 5.805 13.481
Atomic orbital electron populations
1.21768 0.90881 1.01924 1.04398 1.20239 0.98172 0.96610 0.90345
1.21765 1.00292 0.92513 1.04398 1.24003 0.88461 0.87656 0.94934
1.68329 1.22045 1.30965 0.98169 1.24113 0.87532 0.86768 1.00093
1.22973 1.02965 0.99344 0.89543 1.98409 1.87010 1.78076 1.33871
1.20603 0.94895 0.93487 0.89505 1.20805 0.83592 0.85767 0.83112
1.90683 1.54573 1.58085 1.39826 1.83979 1.57552 1.41253 1.28642
1.21714 1.28860 1.03439 0.95423 0.88937 1.26763 0.98320 1.02539
0.92739 1.70078 1.42361 1.40778 0.98842 0.84602 0.77497 0.74913
0.78809 1.18254 1.18135 1.18244 1.68558 1.10855 1.08913 1.33054
0.88859 0.90703 0.94058 0.89560 0.90703 0.94077 0.88856 0.74962
0.90672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.68 9.09 71.98 0.65 -2.03 16
2 C -0.03 -0.87 3.25 -11.54 -0.04 -0.90 16
3 C -0.13 -2.68 9.08 71.98 0.65 -2.03 16
4 C 0.32 10.50 6.34 138.80 0.88 11.38 16
5 N -0.48 -13.40 9.78 -187.78 -1.84 -15.23 16
6 C 0.18 4.74 11.14 84.81 0.94 5.68 16
7 C -0.12 -4.03 6.40 22.81 0.15 -3.88 16
8 Cl 0.00 -0.09 26.25 -2.72 -0.07 -0.16 16
9 C 0.16 7.16 6.79 41.94 0.28 7.45 16
10 C 0.42 22.91 7.90 70.46 0.56 23.47 16
11 O -0.54 -29.37 13.39 20.00 0.27 -29.10 16
12 O -0.21 -12.98 9.59 12.79 0.12 -12.86 16
13 C -0.42 -25.69 9.65 67.98 0.66 -25.04 16
14 H 0.09 5.61 6.86 -2.91 -0.02 5.59 16
15 C 0.00 -0.05 5.50 84.92 0.47 0.42 16
16 N -0.89 -52.64 13.67 21.65 0.30 -52.35 16
17 Si 1.02 42.84 29.55 68.60 2.03 44.87 16
18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16
19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16
20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16
21 N -0.50 -21.46 10.11 -177.11 -1.79 -23.25 16
22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
23 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16
24 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16
25 H 0.09 2.53 8.09 -2.39 -0.02 2.51 16
26 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16
27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
29 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16
30 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16
Total: -1.00 -74.11 288.70 5.39 -68.72
By element:
Atomic # 1 Polarization: 3.67 SS G_CDS: 1.17 Total: 4.85 kcal
Atomic # 6 Polarization: 9.31 SS G_CDS: 5.21 Total: 14.52 kcal
Atomic # 7 Polarization: -87.49 SS G_CDS: -3.33 Total: -90.83 kcal
Atomic # 8 Polarization: -42.35 SS G_CDS: 0.39 Total: -41.96 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal
Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.16 kcal
Total: -74.11 5.39 -68.72 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000744674055.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.049 kcal
(2) G-P(sol) polarization free energy of solvation -74.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds