Wall clock time and date at job start Mon Mar 30 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.31936 * 119.01019 * 299.72956 * 4 2 1 6 6 C 1.32163 * 121.07817 * 179.71422 * 5 4 2 7 7 C 1.38954 * 119.12966 * 0.54570 * 6 5 4 8 8 Cl 1.73599 * 120.88877 * 179.71053 * 7 6 5 9 9 C 1.39746 * 118.21566 * 359.73288 * 7 6 5 10 10 C 1.48164 * 120.56585 * 179.97438 * 9 7 6 11 11 O 1.21451 * 119.99966 * 0.02562 * 10 9 7 12 12 O 1.34655 * 119.99614 * 180.02562 * 10 9 7 13 13 C 1.34789 * 116.99867 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00073 * 359.97438 * 13 12 10 15 15 C 1.38892 * 119.99961 * 179.97438 * 13 12 10 16 16 N 1.31365 * 120.00191 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46910 * 60.00316 * 17 15 13 19 19 H 1.48507 * 109.47087 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47201 * 299.99848 * 17 15 13 21 21 N 1.31504 * 119.01621 * 119.99770 * 4 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.07997 * 120.43415 * 180.25455 * 6 5 4 30 30 H 0.97000 * 120.00079 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7062 -0.2399 2.4191 6 6 2.1195 -0.8338 3.5250 7 6 2.9197 -1.9656 3.4264 8 17 3.4944 -2.7774 4.8492 9 6 3.2498 -2.4323 2.1512 10 6 4.1003 -3.6342 1.9856 11 8 4.5165 -4.2229 2.9629 12 8 4.4117 -4.0737 0.7515 13 6 5.1884 -5.1723 0.6710 14 1 5.5318 -5.6580 1.5724 15 6 5.5472 -5.6797 -0.5711 16 7 5.1291 -5.0892 -1.6676 17 14 6.6243 -7.2019 -0.6826 18 1 5.9441 -8.3396 -0.0131 19 1 6.8607 -7.5376 -2.1098 20 1 7.9237 -6.9389 -0.0136 21 7 2.7871 -1.7779 1.0873 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.8429 -0.4420 4.4926 30 1 5.3794 -5.4438 -2.5351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744674055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:01 Heat of formation + Delta-G solvation = -55.670948 kcal Electronic energy + Delta-G solvation = -18085.098957 eV Core-core repulsion = 14906.453696 eV Total energy + Delta-G solvation = -3178.645262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53657 -40.89810 -38.04762 -37.30275 -36.46104 -35.19888 -34.39055 -32.10492 -28.32964 -28.03897 -26.62916 -25.64775 -23.42138 -21.41851 -20.06377 -19.55132 -18.80006 -17.51234 -17.10190 -17.09146 -16.33874 -16.23780 -15.99455 -15.15769 -15.06365 -14.58706 -14.12083 -13.70237 -13.31847 -13.17812 -13.12893 -12.90091 -12.62265 -12.47428 -12.19903 -12.15244 -12.12069 -12.06130 -12.05225 -11.86772 -11.32174 -10.78105 -10.38025 -10.37092 -8.63704 -6.39833 -0.95804 -0.39153 0.77161 1.29786 1.31452 1.49062 1.59976 1.86381 2.29984 2.44391 2.63113 2.84423 2.93957 3.30122 3.57007 3.92493 4.07949 4.16873 4.46944 4.61450 4.82888 4.84589 4.95951 4.96419 5.06052 5.13229 5.34102 5.37372 5.51347 5.69416 6.41306 6.71721 6.77861 7.60369 8.55458 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.006399 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.542237 B = 4374.524208 C = 5777.310474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 C -0.132 4.132 4 C 0.316 3.684 5 N -0.481 5.481 6 C 0.184 3.816 7 C -0.116 4.116 8 Cl -0.003 7.003 9 C 0.160 3.840 10 C 0.420 3.580 11 O -0.535 6.535 12 O -0.209 6.209 13 C -0.419 4.419 14 H 0.093 0.907 15 C -0.001 4.001 16 N -0.885 5.885 17 Si 1.024 2.976 18 H -0.258 1.258 19 H -0.258 1.258 20 H -0.258 1.258 21 N -0.497 5.497 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.234 0.766 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 11.213 5.789 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 C -0.190 4.190 4 C 0.049 3.951 5 N -0.195 5.195 6 C 0.015 3.985 7 C -0.148 4.148 8 Cl 0.026 6.974 9 C 0.015 3.985 10 C 0.267 3.733 11 O -0.432 6.432 12 O -0.114 6.114 13 C -0.494 4.494 14 H 0.111 0.889 15 C -0.204 4.204 16 N -0.521 5.521 17 Si 0.842 3.158 18 H -0.183 1.183 19 H -0.181 1.181 20 H -0.182 1.182 21 N -0.214 5.214 22 H 0.111 0.889 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.250 0.750 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.060 11.391 5.070 14.847 hybrid contribution 1.030 -1.461 0.735 1.932 sum -7.030 9.931 5.805 13.481 Atomic orbital electron populations 1.21768 0.90881 1.01924 1.04398 1.20239 0.98172 0.96610 0.90345 1.21765 1.00292 0.92513 1.04398 1.24003 0.88461 0.87656 0.94934 1.68329 1.22045 1.30965 0.98169 1.24113 0.87532 0.86768 1.00093 1.22973 1.02965 0.99344 0.89543 1.98409 1.87010 1.78076 1.33871 1.20603 0.94895 0.93487 0.89505 1.20805 0.83592 0.85767 0.83112 1.90683 1.54573 1.58085 1.39826 1.83979 1.57552 1.41253 1.28642 1.21714 1.28860 1.03439 0.95423 0.88937 1.26763 0.98320 1.02539 0.92739 1.70078 1.42361 1.40778 0.98842 0.84602 0.77497 0.74913 0.78809 1.18254 1.18135 1.18244 1.68558 1.10855 1.08913 1.33054 0.88859 0.90703 0.94058 0.89560 0.90703 0.94077 0.88856 0.74962 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.09 71.98 0.65 -2.03 16 2 C -0.03 -0.87 3.25 -11.54 -0.04 -0.90 16 3 C -0.13 -2.68 9.08 71.98 0.65 -2.03 16 4 C 0.32 10.50 6.34 138.80 0.88 11.38 16 5 N -0.48 -13.40 9.78 -187.78 -1.84 -15.23 16 6 C 0.18 4.74 11.14 84.81 0.94 5.68 16 7 C -0.12 -4.03 6.40 22.81 0.15 -3.88 16 8 Cl 0.00 -0.09 26.25 -2.72 -0.07 -0.16 16 9 C 0.16 7.16 6.79 41.94 0.28 7.45 16 10 C 0.42 22.91 7.90 70.46 0.56 23.47 16 11 O -0.54 -29.37 13.39 20.00 0.27 -29.10 16 12 O -0.21 -12.98 9.59 12.79 0.12 -12.86 16 13 C -0.42 -25.69 9.65 67.98 0.66 -25.04 16 14 H 0.09 5.61 6.86 -2.91 -0.02 5.59 16 15 C 0.00 -0.05 5.50 84.92 0.47 0.42 16 16 N -0.89 -52.64 13.67 21.65 0.30 -52.35 16 17 Si 1.02 42.84 29.55 68.60 2.03 44.87 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 N -0.50 -21.46 10.11 -177.11 -1.79 -23.25 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 24 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.09 2.53 8.09 -2.39 -0.02 2.51 16 26 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.11 288.70 5.39 -68.72 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.17 Total: 4.85 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.21 Total: 14.52 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -3.33 Total: -90.83 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: 0.39 Total: -41.96 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.16 kcal Total: -74.11 5.39 -68.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744674055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.049 kcal (2) G-P(sol) polarization free energy of solvation -74.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds