Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36204 * 116.99775 * 2 1 4 4 C 1.34126 * 122.49692 * 359.97376 * 3 2 1 5 5 S 1.70609 * 110.97953 * 179.74448 * 4 3 2 6 6 C 1.75815 * 91.62327 * 0.35775 * 5 4 3 7 7 C 1.46352 * 125.42930 * 179.91102 * 6 5 4 8 8 O 1.21638 * 119.99705 * 179.69383 * 7 6 5 9 9 O 1.34908 * 119.99825 * 359.69275 * 7 6 5 10 10 C 1.42905 * 116.99602 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00370 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47675 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47348 * 119.99771 * 17 15 13 20 20 H 1.48505 * 109.46905 * 239.99775 * 17 15 13 21 21 C 1.36848 * 109.13469 * 359.64658 * 6 5 4 22 22 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 300.00096 * 1 2 3 24 24 H 1.09001 * 109.47360 * 59.99968 * 1 2 3 25 25 H 1.07994 * 124.51199 * 0.04324 * 4 3 2 26 26 H 1.09004 * 109.47054 * 299.99923 * 10 9 7 27 27 H 1.09000 * 109.47187 * 59.99978 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99773 * 11 10 9 29 29 H 1.09004 * 109.47059 * 59.99375 * 11 10 9 30 30 H 1.08996 * 109.47452 * 300.00062 * 12 11 10 31 31 H 1.09000 * 109.47054 * 59.99902 * 12 11 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 33 33 H 1.08001 * 123.36977 * 180.28054 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2136 0.0000 4 6 1.3665 2.3692 -0.0005 5 16 2.4289 3.7041 0.0067 6 6 3.8350 2.6487 -0.0004 7 6 5.2294 3.0932 -0.0005 8 8 6.1287 2.2742 -0.0002 9 8 5.5172 4.4112 -0.0010 10 6 6.8996 4.7733 -0.0017 11 6 7.0275 6.2980 -0.0015 12 6 8.5075 6.6856 -0.0016 13 6 8.6334 8.1873 -0.0021 14 1 7.7466 8.8036 -0.0028 15 6 9.8809 8.7746 -0.0027 16 7 10.9609 8.0242 -0.0024 17 14 10.0370 10.6360 -0.0027 18 1 8.6832 11.2464 -0.0025 19 1 10.7765 11.0708 1.2095 20 1 10.7753 11.0709 -1.2156 21 6 3.4177 1.3455 0.0001 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.2892 2.4447 -0.0003 26 1 7.3816 4.3686 0.8883 27 1 7.3810 4.3680 -0.8917 28 1 6.5454 6.7031 -0.8913 29 1 6.5461 6.7029 0.8887 30 1 8.9893 6.2806 0.8883 31 1 8.9891 6.2807 -0.8916 32 1 11.8386 8.4373 -0.0025 33 1 4.0955 0.5046 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747081684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -101.958894 kcal Electronic energy + Delta-G solvation = -17191.661913 eV Core-core repulsion = 14116.593505 eV Total energy + Delta-G solvation = -3075.068408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45707 -39.92744 -36.89647 -35.89926 -33.98896 -31.74506 -29.99553 -28.31786 -27.18336 -25.05194 -23.19676 -21.71491 -20.43307 -19.58278 -19.00570 -17.44567 -16.93709 -16.49280 -16.29640 -16.10445 -15.81512 -14.78186 -14.46965 -14.16736 -13.71770 -13.31433 -13.17704 -12.94606 -12.22311 -12.20092 -12.05895 -11.87340 -11.32956 -11.20663 -10.99104 -10.72774 -10.64856 -10.48563 -10.39486 -9.72463 -9.52887 -9.25124 -9.14957 -8.38902 -8.33590 -6.03450 -4.06372 0.09651 1.16479 1.64043 2.03196 2.57883 2.82566 3.18482 3.30301 3.37775 3.42044 4.43445 4.53395 4.61799 4.76841 4.87509 4.92198 5.08331 5.32649 5.35806 5.56714 5.58853 5.60224 5.72485 6.00526 6.41101 6.53245 6.79831 6.85399 6.97444 7.60801 7.71516 7.80836 7.95096 8.35980 9.00158 9.57929 11.08057 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.054373 B = 0.002879 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.833485 B = 9724.368686 C =10208.148008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.098 3.902 4 C -0.347 4.347 5 S 0.286 5.714 6 C -0.229 4.229 7 C 0.533 3.467 8 O -0.494 6.494 9 O -0.347 6.347 10 C 0.067 3.933 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.064 4.064 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.173 0.827 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.611 -13.428 0.019 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.041 3.959 4 C -0.486 4.486 5 S 0.554 5.446 6 C -0.348 4.348 7 C 0.376 3.624 8 O -0.384 6.384 9 O -0.263 6.263 10 C -0.007 4.007 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.099 4.099 22 H 0.119 0.881 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.190 0.810 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.279 -12.221 0.029 25.411 hybrid contribution 0.166 -0.591 -0.009 0.614 sum -22.114 -12.812 0.020 25.557 Atomic orbital electron populations 1.23048 0.78163 1.04037 1.01309 1.86115 1.21287 1.25053 1.89555 1.17427 0.91340 0.84874 1.02219 1.25359 1.06293 0.98312 1.18592 1.83363 0.91045 1.04425 1.65744 1.23435 0.96101 0.97438 1.17805 1.19508 0.87325 0.81871 0.73676 1.90902 1.47415 1.54554 1.45496 1.86152 1.32809 1.23982 1.83396 1.23208 0.76216 0.98862 1.02368 1.21781 1.01877 0.88846 1.02047 1.19061 0.87888 0.96672 0.97750 1.21207 0.92298 0.91507 1.50861 0.92363 1.25039 0.95920 0.98356 0.95226 1.69979 0.97707 1.35031 1.50625 0.86488 0.78147 0.85491 0.77596 1.19672 1.20979 1.20984 1.19914 0.93143 0.96495 1.00380 0.88085 0.92707 0.92711 0.80972 0.91442 0.91435 0.92054 0.92056 0.96175 0.96181 0.92943 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.93 101.05 1.00 1.16 16 2 O -0.31 -2.97 10.56 -20.39 -0.22 -3.19 16 3 C 0.10 1.03 6.61 -41.24 -0.27 0.75 16 4 C -0.35 -3.05 9.81 29.28 0.29 -2.77 16 5 S 0.29 2.89 22.92 -107.50 -2.46 0.42 16 6 C -0.23 -2.98 6.45 -36.82 -0.24 -3.22 16 7 C 0.53 8.65 7.91 33.99 0.27 8.92 16 8 O -0.49 -9.18 16.61 -19.37 -0.32 -9.51 16 9 O -0.35 -5.89 9.96 -41.06 -0.41 -6.29 16 10 C 0.07 1.24 5.38 37.16 0.20 1.44 16 11 C -0.11 -2.23 5.52 -26.73 -0.15 -2.37 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.06 -0.76 10.00 -40.29 -0.40 -1.17 16 22 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 24 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 25 H 0.17 1.04 6.96 -52.49 -0.37 0.67 16 26 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 27 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -31.98 309.07 -6.99 -38.97 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -4.10 Total: -5.24 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 0.15 Total: -10.24 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.95 Total: -18.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.46 Total: 0.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.98 -6.99 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747081684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.989 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds