Wall clock time and date at job start Mon Mar 30 2020 00:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47316 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47135 * 30.00139 * 3 2 1 6 6 H 1.48505 * 109.47071 * 150.00188 * 3 2 1 7 7 C 1.38796 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00280 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27055 * 11 10 9 13 13 N 1.34784 * 119.99635 * 180.02562 * 11 10 9 14 14 N 1.40104 * 119.99625 * 179.97438 * 13 11 10 15 15 C 1.39845 * 119.99571 * 179.97438 * 14 13 11 16 16 C 1.38830 * 120.08153 * 0.02562 * 15 14 13 17 17 C 1.38151 * 119.95010 * 180.02562 * 16 15 14 18 18 C 1.38275 * 120.11050 * 359.97438 * 17 16 15 19 19 C 1.38285 * 120.16419 * 0.02562 * 18 17 16 20 20 C 1.38286 * 120.04574 * 359.72466 * 19 18 17 21 21 F 1.35098 * 120.05296 * 180.29644 * 20 19 18 22 22 H 0.97005 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47091 * 59.99746 * 10 9 7 24 24 H 1.09002 * 109.46815 * 300.00070 * 10 9 7 25 25 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 26 26 H 0.96999 * 120.00331 * 0.02562 * 14 13 11 27 27 H 1.07999 * 120.02935 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.94793 * 179.97438 * 17 16 15 29 29 H 1.08004 * 119.91384 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.97569 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 -0.0044 13 7 2.8440 -6.3432 0.0007 14 7 2.3526 -7.6552 0.0019 15 6 3.2416 -8.7347 0.0020 16 6 4.6113 -8.5082 0.0015 17 6 5.4871 -9.5767 0.0011 18 6 5.0017 -10.8714 0.0017 19 6 3.6383 -11.1024 0.0021 20 6 2.7557 -10.0378 0.0078 21 9 1.4237 -10.2633 0.0143 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7314 0.8895 24 1 3.1244 -3.7314 -0.8905 25 1 3.8008 -6.1836 0.0012 26 1 1.3959 -7.8148 0.0018 27 1 4.9920 -7.4975 0.0006 28 1 6.5526 -9.4004 0.0003 29 1 5.6893 -11.7044 0.0009 30 1 3.2625 -12.1149 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748050186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:25 Heat of formation + Delta-G solvation = -16.905206 kcal Electronic energy + Delta-G solvation = -17018.599617 eV Core-core repulsion = 13856.051860 eV Total energy + Delta-G solvation = -3162.547757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.95238 -39.94557 -38.85321 -35.91638 -32.50293 -32.37513 -30.82625 -29.70692 -27.56199 -25.54500 -23.32491 -22.42598 -20.91463 -18.76315 -17.82019 -17.59616 -17.11647 -16.14951 -15.84190 -15.72432 -15.22755 -14.86666 -14.84825 -14.24685 -14.06144 -13.44111 -13.34178 -13.30501 -12.68994 -12.35229 -12.10051 -11.56509 -11.48129 -11.12227 -11.08945 -10.83616 -9.91741 -9.79010 -9.54882 -9.13147 -9.09576 -8.35108 -7.39915 -6.59725 -6.28535 -4.00730 0.93722 1.12991 1.78827 2.82369 3.13312 3.18676 3.25781 3.36512 3.42187 3.99055 4.12057 4.14529 4.48565 4.67804 4.84499 5.02908 5.07060 5.09053 5.38376 5.49516 5.70087 5.70430 5.79748 5.96726 5.99019 6.21059 6.42404 6.75389 7.23867 7.52976 7.59478 8.28080 8.41844 9.16808 10.78849 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.003287 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.881965 B = 8515.738700 C = 9106.467132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.051 6.051 10 C -0.145 4.145 11 C 0.532 3.468 12 O -0.513 6.513 13 N -0.531 5.531 14 N -0.536 5.536 15 C 0.197 3.803 16 C -0.182 4.182 17 C -0.072 4.072 18 C -0.158 4.158 19 C -0.098 4.098 20 C 0.021 3.979 21 F -0.141 7.141 22 H 0.270 0.730 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.420 0.580 26 H 0.438 0.562 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 -19.111 0.008 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.296 4.296 11 C 0.318 3.682 12 O -0.385 6.385 13 N -0.281 5.281 14 N -0.260 5.260 15 C 0.091 3.909 16 C -0.206 4.206 17 C -0.091 4.091 18 C -0.178 4.178 19 C -0.118 4.118 20 C -0.004 4.004 21 F -0.120 7.120 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.261 0.739 26 H 0.282 0.718 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.096 -19.103 0.010 21.606 hybrid contribution 1.796 1.244 -0.006 2.185 sum 11.892 -17.859 0.004 21.456 Atomic orbital electron populations 1.70009 1.05993 1.27636 1.46544 1.25001 0.95050 0.99111 0.94377 0.86134 0.79390 0.81382 0.78399 1.20213 1.20713 1.19629 1.22862 0.94985 0.91444 1.59395 0.90722 1.85503 1.04035 0.96158 1.96769 1.23477 1.07267 0.93301 1.05599 1.20665 0.86498 0.85235 0.75787 1.90738 1.15043 1.84916 1.47809 1.45119 1.09675 0.94638 1.78681 1.43285 1.07744 0.93132 1.81864 1.17805 0.90605 0.85014 0.97489 1.20390 0.90026 1.00135 1.10001 1.20943 0.99617 0.91927 0.96600 1.20778 0.94262 0.97175 1.05603 1.20931 0.93244 0.97857 0.99753 1.16996 0.77956 0.91568 1.13906 1.91476 1.30497 1.95207 1.94818 0.92058 0.88557 0.88536 0.73859 0.71835 0.85492 0.85241 0.85300 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.05 -1.33 20.57 -107.50 -2.21 -3.54 16 10 C -0.14 -2.73 6.16 36.00 0.22 -2.51 16 11 C 0.53 9.59 7.96 -10.98 -0.09 9.50 16 12 O -0.51 -11.35 15.70 5.56 0.09 -11.26 16 13 N -0.53 -7.24 6.22 31.22 0.19 -7.05 16 14 N -0.54 -7.30 6.46 32.46 0.21 -7.09 16 15 C 0.20 2.29 6.73 -83.67 -0.56 1.73 16 16 C -0.18 -1.70 9.48 -39.39 -0.37 -2.07 16 17 C -0.07 -0.55 10.04 -39.60 -0.40 -0.95 16 18 C -0.16 -1.18 10.04 -39.55 -0.40 -1.57 16 19 C -0.10 -0.87 10.02 -39.55 -0.40 -1.26 16 20 C 0.02 0.24 7.31 -39.25 -0.29 -0.05 16 21 F -0.14 -1.79 16.64 2.25 0.04 -1.75 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 24 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 25 H 0.42 4.27 6.61 -182.60 -1.21 3.06 16 26 H 0.44 6.50 7.49 -182.60 -1.37 5.13 16 27 H 0.13 0.97 6.21 -52.49 -0.33 0.65 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -33.35 289.29 -8.25 -41.60 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.56 Total: 3.58 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.08 Total: -9.80 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.14 Total: -39.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.21 Total: -3.54 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.35 -8.25 -41.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748050186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.698 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds