Wall clock time and date at job start Mon Mar 30 2020 00:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47316 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47135 * 30.00139 * 3 2 1 6 6 H 1.48505 * 109.47071 * 150.00188 * 3 2 1 7 7 C 1.38796 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00280 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27055 * 11 10 9 13 13 N 1.34784 * 119.99635 * 180.02562 * 11 10 9 14 14 N 1.40104 * 119.99625 * 179.97438 * 13 11 10 15 15 C 1.39845 * 119.99571 * 179.97438 * 14 13 11 16 16 C 1.38830 * 120.08153 * 0.02562 * 15 14 13 17 17 C 1.38151 * 119.95010 * 180.02562 * 16 15 14 18 18 C 1.38275 * 120.11050 * 359.97438 * 17 16 15 19 19 C 1.38285 * 120.16419 * 0.02562 * 18 17 16 20 20 C 1.38286 * 120.04574 * 359.72466 * 19 18 17 21 21 F 1.35098 * 120.05296 * 180.29644 * 20 19 18 22 22 H 0.97005 * 120.00072 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47091 * 59.99746 * 10 9 7 24 24 H 1.09002 * 109.46815 * 300.00070 * 10 9 7 25 25 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 26 26 H 0.96999 * 120.00331 * 0.02562 * 14 13 11 27 27 H 1.07999 * 120.02935 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.94793 * 179.97438 * 17 16 15 29 29 H 1.08004 * 119.91384 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.97569 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 -0.0044 13 7 2.8440 -6.3432 0.0007 14 7 2.3526 -7.6552 0.0019 15 6 3.2416 -8.7347 0.0020 16 6 4.6113 -8.5082 0.0015 17 6 5.4871 -9.5767 0.0011 18 6 5.0017 -10.8714 0.0017 19 6 3.6383 -11.1024 0.0021 20 6 2.7557 -10.0378 0.0078 21 9 1.4237 -10.2633 0.0143 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7314 0.8895 24 1 3.1244 -3.7314 -0.8905 25 1 3.8008 -6.1836 0.0012 26 1 1.3959 -7.8148 0.0018 27 1 4.9920 -7.4975 0.0006 28 1 6.5526 -9.4004 0.0003 29 1 5.6893 -11.7044 0.0009 30 1 3.2625 -12.1149 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748050186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:24 Heat of formation + Delta-G solvation = -39.589094 kcal Electronic energy + Delta-G solvation = -17019.583264 eV Core-core repulsion = 13856.051860 eV Total energy + Delta-G solvation = -3163.531404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.84247 -41.10234 -39.83789 -37.01474 -34.58983 -33.52751 -31.52045 -30.94856 -28.63353 -27.62675 -24.16879 -23.21392 -22.13172 -20.14765 -19.23429 -18.80423 -18.04775 -17.31663 -16.88045 -16.84326 -16.60551 -16.52480 -16.08264 -15.50967 -15.14393 -14.63415 -14.51761 -14.40840 -14.10148 -13.63131 -13.17565 -12.89220 -12.72583 -12.63397 -12.58213 -12.15110 -11.76103 -11.29707 -11.14413 -10.52346 -10.30173 -9.81631 -8.69666 -8.35631 -8.35221 -6.13945 0.23393 0.39190 0.61979 1.35064 1.42333 1.44152 1.52706 1.64807 2.26189 2.72617 2.93864 2.99760 3.24520 3.31597 3.78690 3.81144 4.07147 4.24417 4.40139 4.44436 4.45489 4.65283 5.03239 5.09028 5.34569 5.42566 5.47870 5.56642 5.92601 6.14466 6.19822 6.49852 7.06502 7.16521 8.73946 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.003287 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.881965 B = 8515.738700 C = 9106.467132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.546 4.546 8 H 0.088 0.912 9 S -0.146 6.146 10 C -0.118 4.118 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.504 5.504 14 N -0.551 5.551 15 C 0.171 3.829 16 C -0.184 4.184 17 C -0.068 4.068 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.005 4.005 21 F -0.157 7.157 22 H 0.271 0.729 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.438 0.562 26 H 0.428 0.572 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.140 -19.948 0.012 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.693 4.693 8 H 0.106 0.894 9 S 0.081 5.919 10 C -0.271 4.271 11 C 0.319 3.681 12 O -0.440 6.440 13 N -0.254 5.254 14 N -0.277 5.277 15 C 0.068 3.932 16 C -0.208 4.208 17 C -0.087 4.087 18 C -0.165 4.165 19 C -0.122 4.122 20 C -0.029 4.029 21 F -0.137 7.137 22 H 0.080 0.920 23 H 0.140 0.860 24 H 0.140 0.860 25 H 0.283 0.717 26 H 0.270 0.730 27 H 0.161 0.839 28 H 0.181 0.819 29 H 0.180 0.820 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.044 -20.003 0.014 24.441 hybrid contribution 0.755 1.236 -0.008 1.449 sum 14.799 -18.766 0.006 23.899 Atomic orbital electron populations 1.70183 1.08054 1.28659 1.48011 1.26141 0.95943 1.03403 0.93720 0.84930 0.78248 0.75904 0.78762 1.19364 1.20575 1.17922 1.23228 0.95570 0.91679 1.58867 0.89358 1.85711 1.09907 0.99159 1.97110 1.23250 1.04068 0.91755 1.08003 1.20388 0.86051 0.85798 0.75867 1.90724 1.17157 1.85519 1.50604 1.44609 1.09909 0.94484 1.76361 1.43338 1.07734 0.92959 1.83661 1.18102 0.91339 0.84404 0.99375 1.20737 0.89145 1.01752 1.09126 1.21390 1.01057 0.91374 0.94835 1.21251 0.93986 0.98343 1.02968 1.21262 0.93738 0.98039 0.99134 1.17441 0.77743 0.92425 1.15311 1.91430 1.31805 1.95316 1.95102 0.92004 0.86005 0.85972 0.71670 0.73035 0.83911 0.81933 0.82050 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.55 -30.14 9.50 67.95 0.65 -29.49 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -7.85 20.57 -56.49 -1.16 -9.01 16 10 C -0.12 -4.37 6.16 71.23 0.44 -3.93 16 11 C 0.53 19.20 7.96 87.65 0.70 19.90 16 12 O -0.56 -25.92 15.70 -3.01 -0.05 -25.97 16 13 N -0.50 -13.24 6.22 -173.53 -1.08 -14.32 16 14 N -0.55 -15.05 6.46 -51.21 -0.33 -15.38 16 15 C 0.17 3.82 6.73 38.21 0.26 4.08 16 16 C -0.18 -2.94 9.48 22.39 0.21 -2.73 16 17 C -0.07 -0.76 10.04 22.26 0.22 -0.53 16 18 C -0.15 -1.60 10.04 22.29 0.22 -1.37 16 19 C -0.10 -1.58 10.02 22.29 0.22 -1.36 16 20 C 0.00 -0.10 7.31 22.48 0.16 0.06 16 21 F -0.16 -4.14 16.64 44.97 0.75 -3.39 16 22 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 23 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 24 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 25 H 0.44 7.87 6.61 -213.32 -1.41 6.46 16 26 H 0.43 13.37 7.49 -213.32 -1.60 11.77 16 27 H 0.14 1.70 6.21 -2.91 -0.02 1.68 16 28 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -75.91 289.29 2.19 -73.72 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -1.81 Total: 19.04 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 3.55 Total: -14.20 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.12 Total: -84.80 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.75 Total: -3.39 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -75.91 2.19 -73.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748050186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.131 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds