Wall clock time and date at job start Mon Mar 30 2020 00:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00282 * 2 1 4 4 H 1.48502 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47272 * 300.00168 * 3 2 1 6 6 H 1.48502 * 109.47445 * 59.99691 * 3 2 1 7 7 C 1.38804 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99684 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99628 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.40097 * 119.99967 * 179.97438 * 13 11 10 15 15 C 1.39671 * 119.99833 * 180.02562 * 14 13 11 16 16 C 1.38946 * 120.06186 * 359.97438 * 15 14 13 17 17 C 1.38100 * 119.97200 * 180.02562 * 16 15 14 18 18 C 1.38266 * 120.10196 * 0.02562 * 17 16 15 19 19 C 1.38502 * 120.12307 * 0.02562 * 18 17 16 20 20 F 1.35102 * 119.98545 * 179.97438 * 19 18 17 21 21 C 1.38346 * 120.02423 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99345 * 0.02562 * 1 2 3 23 23 H 1.08989 * 109.47375 * 60.00233 * 10 9 7 24 24 H 1.09002 * 109.47084 * 299.99873 * 10 9 7 25 25 H 0.96999 * 120.00022 * 359.97438 * 13 11 10 26 26 H 0.96999 * 120.00011 * 359.97438 * 14 13 11 27 27 H 1.07995 * 120.01377 * 0.02562 * 16 15 14 28 28 H 1.08000 * 119.94820 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.94070 * 179.97438 * 18 17 16 30 30 H 1.07991 * 120.04979 * 180.27899 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0038 13 7 2.8439 -6.3432 0.0049 14 7 2.3525 -7.6552 0.0060 15 6 3.2404 -8.7334 0.0080 16 6 4.6112 -8.5062 0.0082 17 6 5.4874 -9.5737 0.0096 18 6 5.0028 -10.8686 0.0102 19 6 3.6372 -11.0997 0.0089 20 9 3.1667 -12.3662 0.0089 21 6 2.7548 -10.0342 0.0075 22 1 -0.4849 0.8401 -0.0004 23 1 3.1243 -3.7307 0.8927 24 1 3.1243 -3.7322 -0.8872 25 1 3.8007 -6.1836 0.0051 26 1 1.3958 -7.8148 0.0062 27 1 4.9912 -7.4954 0.0074 28 1 6.5528 -9.3967 0.0102 29 1 5.6904 -11.7015 0.0109 30 1 1.6899 -10.2140 0.0110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748090477.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:03 Heat of formation + Delta-G solvation = -18.428788 kcal Electronic energy + Delta-G solvation = -16802.643086 eV Core-core repulsion = 13640.029262 eV Total energy + Delta-G solvation = -3162.613824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.10764 -40.05743 -38.86233 -35.81734 -32.52238 -32.48104 -30.75088 -29.70165 -27.65028 -25.55872 -23.39674 -22.38552 -20.94101 -18.88781 -17.89841 -17.46169 -16.52647 -16.39290 -16.04574 -15.81852 -15.31669 -15.01674 -14.87714 -14.29210 -13.98208 -13.55893 -13.52059 -13.30949 -12.70280 -12.34724 -12.08490 -11.54530 -11.45233 -11.12611 -11.11352 -10.84392 -9.91976 -9.82198 -9.57158 -9.15205 -9.06473 -8.36546 -7.48966 -6.61334 -6.30203 -4.02275 0.94215 1.14155 1.76711 2.79303 3.12062 3.16900 3.25399 3.35501 3.42247 3.99421 4.11207 4.18256 4.51906 4.72523 4.82181 4.90714 5.05622 5.13788 5.33733 5.48563 5.68452 5.70195 5.81887 5.94881 5.95526 6.12686 6.43677 6.74208 7.23474 7.52064 7.57178 8.26958 8.39242 9.15468 10.77244 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.056068 B = 0.002989 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.276917 B = 9365.118257 C = 9849.251964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.051 6.051 10 C -0.145 4.145 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.533 5.533 14 N -0.534 5.534 15 C 0.253 3.747 16 C -0.214 4.214 17 C -0.036 4.036 18 C -0.219 4.219 19 C 0.153 3.847 20 F -0.139 7.139 21 C -0.233 4.233 22 H 0.269 0.731 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.421 0.579 26 H 0.436 0.564 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.465 -18.094 0.022 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.297 4.297 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.283 5.283 14 N -0.257 5.257 15 C 0.146 3.854 16 C -0.238 4.238 17 C -0.054 4.054 18 C -0.240 4.240 19 C 0.133 3.867 20 F -0.117 7.117 21 C -0.258 4.258 22 H 0.079 0.921 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.262 0.738 26 H 0.279 0.721 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.310 -18.127 0.022 20.378 hybrid contribution 1.911 1.051 0.001 2.181 sum 11.221 -17.075 0.023 20.433 Atomic orbital electron populations 1.70022 1.05989 1.27532 1.46638 1.25009 0.95057 0.99134 0.94379 0.86082 0.79560 0.81681 0.77961 1.19551 1.20520 1.20514 1.22900 0.95013 0.91406 1.59275 0.90666 1.85491 1.04059 0.96220 1.96768 1.23479 1.07270 0.93337 1.05615 1.20656 0.86479 0.85260 0.75711 1.90736 1.15036 1.84953 1.47933 1.45142 1.09743 0.94735 1.78639 1.43406 1.07701 0.93207 1.81386 1.17398 0.89553 0.85593 0.92870 1.20528 0.90986 0.99914 1.12371 1.20696 0.99638 0.90972 0.94134 1.20879 0.93329 0.98427 1.11355 1.17249 0.92000 0.78282 0.99194 1.91501 1.89317 1.37297 1.93620 1.20257 1.00546 0.89846 1.15112 0.92111 0.88542 0.88548 0.73777 0.72070 0.85783 0.84880 0.85063 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 8 H 0.08 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.05 -1.33 20.57 -107.50 -2.21 -3.54 16 10 C -0.15 -2.68 6.16 36.01 0.22 -2.45 16 11 C 0.53 9.19 7.96 -10.98 -0.09 9.11 16 12 O -0.51 -10.89 15.70 5.55 0.09 -10.81 16 13 N -0.53 -6.79 6.22 31.22 0.19 -6.60 16 14 N -0.53 -6.45 6.45 32.41 0.21 -6.25 16 15 C 0.25 2.67 6.72 -83.80 -0.56 2.11 16 16 C -0.21 -1.94 9.48 -39.37 -0.37 -2.32 16 17 C -0.04 -0.28 10.04 -39.62 -0.40 -0.68 16 18 C -0.22 -1.89 10.02 -39.47 -0.40 -2.29 16 19 C 0.15 1.55 7.30 -39.44 -0.29 1.26 16 20 F -0.14 -1.49 17.27 2.25 0.04 -1.46 16 21 C -0.23 -2.38 9.87 -39.31 -0.39 -2.76 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 24 H 0.10 1.60 8.14 -51.91 -0.42 1.17 16 25 H 0.42 4.04 6.60 -182.60 -1.21 2.83 16 26 H 0.44 5.44 8.01 -182.60 -1.46 3.98 16 27 H 0.12 0.92 6.20 -52.49 -0.33 0.60 16 28 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -32.72 290.23 -8.32 -41.05 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.65 Total: 2.70 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.07 Total: -10.49 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 1.14 Total: -37.58 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.21 Total: -3.54 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.72 -8.32 -41.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748090477.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.617 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds