Wall clock time and date at job start Mon Mar 30 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00282 * 2 1 4 4 H 1.48502 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47272 * 300.00168 * 3 2 1 6 6 H 1.48502 * 109.47445 * 59.99691 * 3 2 1 7 7 C 1.38804 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99684 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99628 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.40097 * 119.99967 * 179.97438 * 13 11 10 15 15 C 1.39671 * 119.99833 * 180.02562 * 14 13 11 16 16 C 1.38946 * 120.06186 * 359.97438 * 15 14 13 17 17 C 1.38100 * 119.97200 * 180.02562 * 16 15 14 18 18 C 1.38266 * 120.10196 * 0.02562 * 17 16 15 19 19 C 1.38502 * 120.12307 * 0.02562 * 18 17 16 20 20 F 1.35102 * 119.98545 * 179.97438 * 19 18 17 21 21 C 1.38346 * 120.02423 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99345 * 0.02562 * 1 2 3 23 23 H 1.08989 * 109.47375 * 60.00233 * 10 9 7 24 24 H 1.09002 * 109.47084 * 299.99873 * 10 9 7 25 25 H 0.96999 * 120.00022 * 359.97438 * 13 11 10 26 26 H 0.96999 * 120.00011 * 359.97438 * 14 13 11 27 27 H 1.07995 * 120.01377 * 0.02562 * 16 15 14 28 28 H 1.08000 * 119.94820 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.94070 * 179.97438 * 18 17 16 30 30 H 1.07991 * 120.04979 * 180.27899 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0038 13 7 2.8439 -6.3432 0.0049 14 7 2.3525 -7.6552 0.0060 15 6 3.2404 -8.7334 0.0080 16 6 4.6112 -8.5062 0.0082 17 6 5.4874 -9.5737 0.0096 18 6 5.0028 -10.8686 0.0102 19 6 3.6372 -11.0997 0.0089 20 9 3.1667 -12.3662 0.0089 21 6 2.7548 -10.0342 0.0075 22 1 -0.4849 0.8401 -0.0004 23 1 3.1243 -3.7307 0.8927 24 1 3.1243 -3.7322 -0.8872 25 1 3.8007 -6.1836 0.0051 26 1 1.3958 -7.8148 0.0062 27 1 4.9912 -7.4954 0.0074 28 1 6.5528 -9.3967 0.0102 29 1 5.6904 -11.7015 0.0109 30 1 1.6899 -10.2140 0.0110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748090477.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:02 Heat of formation + Delta-G solvation = -40.205552 kcal Electronic energy + Delta-G solvation = -16803.587398 eV Core-core repulsion = 13640.029262 eV Total energy + Delta-G solvation = -3163.558136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.90159 -41.13512 -39.87810 -36.87263 -34.57930 -33.55239 -31.58430 -30.81870 -28.70754 -27.61928 -24.18555 -23.22757 -22.10494 -20.14193 -19.39055 -18.65944 -17.56645 -17.20876 -16.90099 -16.87225 -16.72554 -16.54487 -16.08646 -15.91492 -14.98338 -14.63717 -14.55014 -14.52201 -14.06676 -13.64740 -13.15955 -12.91404 -12.77415 -12.60421 -12.44706 -12.23993 -11.72996 -11.26749 -11.15428 -10.49080 -10.28301 -9.81315 -8.68077 -8.39301 -8.34758 -6.12680 0.21300 0.39902 0.65676 1.36275 1.42943 1.45886 1.54006 1.66990 2.26771 2.69731 2.96029 3.00430 3.29254 3.38380 3.81429 3.85080 4.07230 4.19698 4.27122 4.42920 4.48472 4.61849 5.00969 5.11465 5.25812 5.41109 5.44020 5.52718 5.91757 6.19570 6.20934 6.56432 7.07477 7.20555 8.74550 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.056068 B = 0.002989 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.276917 B = 9365.118257 C = 9849.251964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.088 0.912 9 S -0.145 6.145 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.562 6.562 13 N -0.507 5.507 14 N -0.543 5.543 15 C 0.235 3.765 16 C -0.215 4.215 17 C -0.031 4.031 18 C -0.213 4.213 19 C 0.133 3.867 20 F -0.147 7.147 21 C -0.239 4.239 22 H 0.271 0.729 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.438 0.562 26 H 0.431 0.569 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.821 -18.380 0.024 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.692 4.692 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.273 4.273 11 C 0.321 3.679 12 O -0.439 6.439 13 N -0.256 5.256 14 N -0.268 5.268 15 C 0.131 3.869 16 C -0.238 4.238 17 C -0.049 4.049 18 C -0.233 4.233 19 C 0.113 3.887 20 F -0.125 7.125 21 C -0.264 4.264 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.283 0.717 26 H 0.274 0.726 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.751 -18.471 0.024 22.445 hybrid contribution 0.985 0.909 0.001 1.340 sum 13.737 -17.562 0.025 22.296 Atomic orbital electron populations 1.70188 1.08008 1.28557 1.48131 1.26127 0.95940 1.03363 0.93796 0.84898 0.78761 0.76345 0.77905 1.17746 1.20175 1.20164 1.23256 0.95547 0.91729 1.58643 0.89416 1.85679 1.09917 0.99130 1.97096 1.23257 1.04047 0.92005 1.07951 1.20307 0.86044 0.85726 0.75846 1.90726 1.17040 1.85500 1.50592 1.44635 1.09946 0.94688 1.76338 1.43456 1.07851 0.92722 1.82759 1.17553 0.90104 0.85039 0.94188 1.20873 0.90337 1.01396 1.11189 1.21090 1.01187 0.90053 0.92619 1.21229 0.92858 0.99681 1.09577 1.17483 0.92839 0.77954 1.00405 1.91481 1.89528 1.37699 1.93817 1.20366 1.00964 0.90065 1.15011 0.92033 0.86072 0.86080 0.71685 0.72624 0.83951 0.81517 0.83100 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.75 13.22 21.65 0.29 -54.46 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -29.62 9.50 67.96 0.65 -28.98 16 8 H 0.09 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -7.64 20.57 -56.49 -1.16 -8.80 16 10 C -0.12 -4.27 6.16 71.24 0.44 -3.83 16 11 C 0.53 18.05 7.96 87.66 0.70 18.75 16 12 O -0.56 -24.31 15.70 -3.05 -0.05 -24.36 16 13 N -0.51 -11.98 6.22 -173.53 -1.08 -13.06 16 14 N -0.54 -12.61 6.45 -51.38 -0.33 -12.94 16 15 C 0.24 4.61 6.72 38.21 0.26 4.86 16 16 C -0.21 -3.22 9.48 22.41 0.21 -3.01 16 17 C -0.03 -0.37 10.04 22.24 0.22 -0.15 16 18 C -0.21 -3.07 10.02 22.34 0.22 -2.85 16 19 C 0.13 2.52 7.30 22.36 0.16 2.69 16 20 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 21 C -0.24 -4.71 9.87 22.44 0.22 -4.49 16 22 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 24 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 25 H 0.44 7.02 6.60 -213.32 -1.41 5.61 16 26 H 0.43 10.87 8.01 -213.32 -1.71 9.17 16 27 H 0.14 1.54 6.20 -2.91 -0.02 1.52 16 28 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 29 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.14 2.55 8.06 -2.92 -0.02 2.53 16 Total: -1.00 -72.97 290.23 2.10 -70.87 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -1.92 Total: 16.66 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.55 Total: -15.85 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.12 Total: -80.47 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Total: -72.97 2.10 -70.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748090477.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.663 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds