Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48498 * 109.46925 * 269.99736 * 3 2 1 5 5 H 1.48492 * 109.47542 * 30.00017 * 3 2 1 6 6 H 1.48498 * 109.47124 * 150.00083 * 3 2 1 7 7 C 1.38799 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00348 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.21271 * 120.00153 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99698 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47204 * 179.97438 * 14 13 11 16 16 C 1.38147 * 119.59404 * 95.00283 * 15 14 13 17 17 C 1.38712 * 119.22070 * 180.02562 * 16 15 14 18 18 C 1.38548 * 118.45174 * 0.27936 * 17 16 15 19 19 C 1.38522 * 119.13580 * 359.45004 * 18 17 16 20 20 F 1.35100 * 119.65073 * 180.27548 * 19 18 17 21 21 N 1.31901 * 119.60933 * 275.02714 * 15 14 13 22 22 H 0.97006 * 119.99865 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47073 * 59.99624 * 10 9 7 24 24 H 1.09007 * 109.46958 * 299.99942 * 10 9 7 25 25 H 0.97001 * 119.99920 * 0.02562 * 13 11 10 26 26 H 1.09002 * 109.47190 * 60.00383 * 14 13 11 27 27 H 1.08994 * 109.47528 * 300.00635 * 14 13 11 28 28 H 1.08001 * 120.39320 * 359.97438 * 16 15 14 29 29 H 1.08002 * 120.77240 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.43302 * 179.70248 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0010 13 7 2.8439 -6.3432 -0.0003 14 6 2.3301 -7.7151 0.0009 15 6 3.4845 -8.6839 -0.0005 16 6 3.9415 -9.2023 1.1956 17 6 5.0048 -10.0930 1.1854 18 6 5.5752 -10.4260 -0.0325 19 6 5.0605 -9.8709 -1.1926 20 9 5.6051 -10.1928 -2.3863 21 7 4.0466 -9.0262 -1.1436 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8894 24 1 3.1243 -3.7314 -0.8906 25 1 3.8007 -6.1836 -0.0006 26 1 1.7206 -7.8756 -0.8884 27 1 1.7223 -7.8748 0.8914 28 1 3.4769 -8.9169 2.1279 29 1 5.3825 -10.5132 2.1058 30 1 6.4077 -11.1126 -0.0772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749086692.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = -43.646325 kcal Electronic energy + Delta-G solvation = -16845.514283 eV Core-core repulsion = 13681.806944 eV Total energy + Delta-G solvation = -3163.707339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.34697 -40.68445 -39.02988 -34.92224 -33.09986 -32.42483 -31.71154 -29.42449 -26.54868 -25.43800 -23.91200 -22.73423 -20.46452 -18.36706 -17.91587 -17.39483 -16.61569 -16.52885 -16.24705 -15.89647 -15.19735 -14.79909 -14.46936 -14.02807 -13.92023 -13.49771 -13.37323 -13.08458 -13.00135 -12.58337 -12.44211 -11.78662 -11.05868 -11.02056 -10.76868 -10.52333 -10.12224 -9.81822 -9.64667 -9.26196 -9.07161 -8.97371 -8.23798 -6.49738 -6.21308 -3.91889 0.37260 0.63413 2.85138 3.04308 3.08862 3.18686 3.23105 3.29682 3.37587 3.77999 3.95305 4.17754 4.20864 4.43932 4.51970 4.88221 5.12389 5.13908 5.18548 5.26639 5.47726 5.55438 5.60530 5.73299 5.88880 6.12904 6.14046 6.47893 7.22088 7.59826 7.62594 8.35660 8.55175 9.24073 10.86118 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.003150 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.733340 B = 8886.712998 C = 9137.788852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.733 5.733 14 C 0.171 3.829 15 C 0.151 3.849 16 C -0.164 4.164 17 C -0.047 4.047 18 C -0.191 4.191 19 C 0.308 3.692 20 F -0.111 7.111 21 N -0.499 5.499 22 H 0.268 0.732 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.399 0.601 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.428 -20.913 3.289 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.322 3.678 12 O -0.388 6.388 13 N -0.388 5.388 14 C 0.047 3.953 15 C 0.013 3.987 16 C -0.185 4.185 17 C -0.073 4.073 18 C -0.213 4.213 19 C 0.154 3.846 20 F -0.091 7.091 21 N -0.214 5.214 22 H 0.078 0.922 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.946 -20.805 2.465 23.192 hybrid contribution 2.967 0.829 0.387 3.105 sum 12.914 -19.977 2.851 23.957 Atomic orbital electron populations 1.70020 1.05950 1.27462 1.46851 1.24992 0.95032 0.99031 0.94524 0.86160 0.79393 0.81541 0.78365 1.20261 1.20759 1.19700 1.22871 0.94929 0.91651 1.58972 0.90910 1.85391 1.04809 0.96289 1.96726 1.23529 1.06668 0.95070 1.05061 1.20320 0.86416 0.86123 0.74990 1.90711 1.15254 1.85458 1.47418 1.45923 1.10175 1.04477 1.78262 1.20105 0.91521 0.79298 1.04379 1.21032 0.95265 0.95445 0.86962 1.22150 0.98106 0.98520 0.99707 1.21548 0.93536 0.94241 0.97926 1.21907 1.03540 1.03908 0.91931 1.18144 0.91301 0.93868 0.81248 1.91649 1.82967 1.90180 1.44257 1.66817 1.09373 1.13565 1.31655 0.92175 0.89125 0.89094 0.76704 0.89361 0.89167 0.83279 0.83298 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.54 9.88 7.85 -10.98 -0.09 9.80 16 12 O -0.51 -11.49 15.86 5.56 0.09 -11.40 16 13 N -0.73 -9.89 5.55 -61.48 -0.34 -10.23 16 14 C 0.17 2.01 5.98 -5.19 -0.03 1.98 16 15 C 0.15 1.51 6.15 -82.59 -0.51 1.00 16 16 C -0.16 -1.16 9.72 -39.44 -0.38 -1.54 16 17 C -0.05 -0.26 10.17 -39.29 -0.40 -0.66 16 18 C -0.19 -1.30 10.09 -39.36 -0.40 -1.69 16 19 C 0.31 3.14 8.41 -17.35 -0.15 2.99 16 20 F -0.11 -1.21 17.29 2.25 0.04 -1.18 16 21 N -0.50 -5.92 10.29 -9.81 -0.10 -6.02 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 24 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 25 H 0.40 4.51 8.46 -40.82 -0.35 4.16 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 28 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 30 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -35.00 294.38 -6.76 -41.75 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -2.84 Total: -0.57 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.53 Total: -3.95 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.29 Total: -41.68 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.00 -6.76 -41.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749086692.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.894 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds