Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48498 * 109.46925 * 269.99736 * 3 2 1 5 5 H 1.48492 * 109.47542 * 30.00017 * 3 2 1 6 6 H 1.48498 * 109.47124 * 150.00083 * 3 2 1 7 7 C 1.38799 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00348 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.21271 * 120.00153 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99698 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47204 * 179.97438 * 14 13 11 16 16 C 1.38147 * 119.59404 * 95.00283 * 15 14 13 17 17 C 1.38712 * 119.22070 * 180.02562 * 16 15 14 18 18 C 1.38548 * 118.45174 * 0.27936 * 17 16 15 19 19 C 1.38522 * 119.13580 * 359.45004 * 18 17 16 20 20 F 1.35100 * 119.65073 * 180.27548 * 19 18 17 21 21 N 1.31901 * 119.60933 * 275.02714 * 15 14 13 22 22 H 0.97006 * 119.99865 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47073 * 59.99624 * 10 9 7 24 24 H 1.09007 * 109.46958 * 299.99942 * 10 9 7 25 25 H 0.97001 * 119.99920 * 0.02562 * 13 11 10 26 26 H 1.09002 * 109.47190 * 60.00383 * 14 13 11 27 27 H 1.08994 * 109.47528 * 300.00635 * 14 13 11 28 28 H 1.08001 * 120.39320 * 359.97438 * 16 15 14 29 29 H 1.08002 * 120.77240 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.43302 * 179.70248 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0010 13 7 2.8439 -6.3432 -0.0003 14 6 2.3301 -7.7151 0.0009 15 6 3.4845 -8.6839 -0.0005 16 6 3.9415 -9.2023 1.1956 17 6 5.0048 -10.0930 1.1854 18 6 5.5752 -10.4260 -0.0325 19 6 5.0605 -9.8709 -1.1926 20 9 5.6051 -10.1928 -2.3863 21 7 4.0466 -9.0262 -1.1436 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8894 24 1 3.1243 -3.7314 -0.8906 25 1 3.8007 -6.1836 -0.0006 26 1 1.7206 -7.8756 -0.8884 27 1 1.7223 -7.8748 0.8914 28 1 3.4769 -8.9169 2.1279 29 1 5.3825 -10.5132 2.1058 30 1 6.4077 -11.1126 -0.0772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749086692.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = -69.510293 kcal Electronic energy + Delta-G solvation = -16846.635829 eV Core-core repulsion = 13681.806944 eV Total energy + Delta-G solvation = -3164.828885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.07446 -41.41806 -40.40115 -36.08922 -34.58041 -33.75476 -32.66274 -30.78183 -27.82351 -27.30949 -24.52514 -23.48399 -21.86785 -19.93388 -18.95608 -18.33053 -17.79737 -17.26535 -17.11428 -16.99416 -16.87194 -16.56514 -15.83714 -15.21858 -14.90800 -14.55888 -14.48131 -14.23910 -14.10191 -13.82475 -13.30716 -13.16282 -13.06732 -12.88470 -12.60613 -11.73571 -11.19205 -11.13940 -11.01280 -10.76264 -10.28141 -10.22487 -10.03759 -8.66219 -8.34287 -6.12319 -0.24964 0.06541 1.27049 1.43155 1.47164 1.57175 1.58169 2.13776 2.27838 2.41024 2.66638 2.99920 3.27025 3.32348 3.62115 3.88581 3.95948 4.03542 4.27247 4.32818 4.46021 4.50789 4.67505 4.70346 4.96366 5.05523 5.27722 5.42420 5.56289 6.20277 6.38985 6.56443 7.07059 7.16236 8.74938 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037090 B = 0.003150 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.733340 B = 8886.712998 C = 9137.788852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.560 6.560 13 N -0.708 5.708 14 C 0.173 3.827 15 C 0.131 3.869 16 C -0.152 4.152 17 C -0.034 4.034 18 C -0.174 4.174 19 C 0.277 3.723 20 F -0.126 7.126 21 N -0.539 5.539 22 H 0.271 0.729 23 H 0.114 0.886 24 H 0.106 0.894 25 H 0.413 0.587 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.193 0.807 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 -21.812 4.872 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.438 6.438 13 N -0.363 5.363 14 C 0.049 3.951 15 C -0.006 4.006 16 C -0.172 4.172 17 C -0.060 4.060 18 C -0.195 4.195 19 C 0.124 3.876 20 F -0.105 7.105 21 N -0.255 5.255 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.249 0.751 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.191 0.809 29 H 0.210 0.790 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.811 -21.744 4.047 25.560 hybrid contribution 2.162 0.928 -0.090 2.355 sum 14.973 -20.815 3.957 25.945 Atomic orbital electron populations 1.70183 1.07959 1.28630 1.47964 1.26126 0.95974 1.03310 0.93716 0.84946 0.78234 0.76013 0.78741 1.19458 1.20228 1.18129 1.23214 0.95373 0.92050 1.58929 0.89929 1.85551 1.10326 0.99110 1.97051 1.23366 1.03687 0.94169 1.06856 1.20017 0.86101 0.86440 0.74972 1.90699 1.17149 1.85957 1.49987 1.45658 1.10276 1.04421 1.75901 1.20153 0.92563 0.78390 1.04004 1.20768 0.95549 0.96474 0.87839 1.22433 0.97915 0.97615 0.99223 1.22054 0.92159 0.92810 0.98951 1.22276 1.03458 1.02845 0.90954 1.18514 0.92003 0.95168 0.81959 1.91608 1.83182 1.90414 1.45307 1.66591 1.10684 1.15037 1.33177 0.91967 0.86790 0.87591 0.75098 0.91561 0.87797 0.80899 0.79022 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.54 19.83 7.85 87.66 0.69 20.52 16 12 O -0.56 -25.66 15.86 -3.00 -0.05 -25.71 16 13 N -0.71 -18.42 5.55 -466.80 -2.59 -21.01 16 14 C 0.17 3.96 5.98 85.63 0.51 4.47 16 15 C 0.13 2.44 6.15 42.53 0.26 2.70 16 16 C -0.15 -1.62 9.72 22.36 0.22 -1.40 16 17 C -0.03 -0.23 10.17 22.46 0.23 0.00 16 18 C -0.17 -1.79 10.09 22.41 0.23 -1.56 16 19 C 0.28 5.35 8.41 84.73 0.71 6.06 16 20 F -0.13 -2.74 17.29 44.97 0.78 -1.96 16 21 N -0.54 -12.57 10.29 -184.95 -1.90 -14.48 16 22 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 23 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 24 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 25 H 0.41 8.59 8.46 -92.71 -0.78 7.80 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.19 -0.32 8.06 -2.91 -0.02 -0.34 16 30 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -79.76 294.38 2.18 -77.58 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.39 Total: 8.41 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.40 Total: -3.38 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.21 Total: -91.24 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -79.76 2.18 -77.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749086692.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.066 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds