Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99902 * 2 1 4 4 H 1.48496 * 109.47607 * 270.00587 * 3 2 1 5 5 H 1.48500 * 109.47308 * 30.00714 * 3 2 1 6 6 H 1.48504 * 109.46847 * 150.00359 * 3 2 1 7 7 C 1.37872 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00465 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99910 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47299 * 180.02562 * 10 9 7 12 12 O 1.45192 * 109.47211 * 179.97438 * 11 10 9 13 13 C 1.34685 * 116.99925 * 179.97438 * 12 11 10 14 14 O 1.21430 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.48042 * 119.99983 * 180.02562 * 13 12 11 16 16 C 1.39440 * 120.08814 * 179.97438 * 15 13 12 17 17 N 1.32097 * 119.90293 * 180.02562 * 16 15 13 18 18 C 1.32104 * 120.09213 * 0.02562 * 17 16 15 19 19 C 1.38922 * 120.18103 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 119.95252 * 179.97438 * 19 18 17 21 21 N 1.31870 * 120.09753 * 359.97438 * 19 18 17 22 22 H 0.97005 * 120.00378 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47251 * 60.00381 * 9 7 2 24 24 H 1.08997 * 109.47614 * 300.00043 * 9 7 2 25 25 H 1.08996 * 109.47208 * 60.00344 * 10 9 7 26 26 H 1.08998 * 109.47381 * 300.00203 * 10 9 7 27 27 H 1.09002 * 109.47102 * 59.99552 * 11 10 9 28 28 H 1.09006 * 109.46757 * 300.00012 * 11 10 9 29 29 H 1.07993 * 120.05074 * 0.04144 * 16 15 13 30 30 H 1.08006 * 119.90759 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 8 6.0354 -4.0055 -0.0002 13 6 7.3707 -4.1820 -0.0006 14 8 8.1104 -3.2190 -0.0011 15 6 7.9365 -5.5500 -0.0005 16 6 9.3186 -5.7349 -0.0014 17 7 9.8195 -6.9572 -0.0018 18 6 9.0130 -8.0035 -0.0018 19 6 7.6355 -7.8236 -0.0020 20 17 6.5813 -9.2028 -0.0026 21 7 7.1276 -6.6067 -0.0016 22 1 -0.4851 0.8401 0.0004 23 1 3.8751 -0.6805 0.8888 24 1 3.8745 -0.6800 -0.8911 25 1 3.6578 -3.1506 -0.8907 26 1 3.6584 -3.1502 0.8892 27 1 5.9148 -2.1227 0.8890 28 1 5.9148 -2.1228 -0.8910 29 1 9.9785 -4.8801 -0.0016 30 1 9.4258 -9.0016 -0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758638147.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -69.727906 kcal Electronic energy + Delta-G solvation = -17078.893146 eV Core-core repulsion = 13899.638329 eV Total energy + Delta-G solvation = -3179.254817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.68408 -41.28081 -38.12311 -37.91328 -36.06460 -35.75172 -33.88947 -32.92392 -29.60664 -27.31395 -25.95466 -24.84195 -22.79945 -22.08294 -19.85085 -19.14288 -18.88993 -18.12817 -17.90986 -17.87808 -16.75166 -16.53812 -16.28795 -15.62477 -14.87348 -14.77518 -14.26726 -14.02643 -13.77603 -13.48475 -13.14288 -12.88690 -12.66306 -12.59323 -12.45829 -12.39177 -12.08916 -11.84832 -11.75642 -11.43547 -11.37520 -10.77675 -10.63924 -10.58217 -8.30237 -6.35817 -1.15406 -0.49965 0.38116 1.02496 1.22072 1.37665 1.39452 1.51218 2.23758 2.36139 2.64575 2.82969 2.87503 3.04923 3.57520 3.60858 3.96339 3.98191 4.07302 4.35580 4.64618 4.72169 4.76775 4.92939 5.12203 5.42668 5.47944 5.55981 5.61926 6.08845 6.25336 6.41296 6.72185 7.28702 8.86539 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.003363 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.749221 B = 8323.647219 C = 9227.649030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.008 4.008 10 C -0.094 4.094 11 C 0.072 3.928 12 O -0.342 6.342 13 C 0.525 3.475 14 O -0.503 6.503 15 C 0.047 3.953 16 C 0.132 3.868 17 N -0.426 5.426 18 C 0.129 3.871 19 C 0.111 3.889 20 Cl 0.008 6.992 21 N -0.412 5.412 22 H 0.267 0.733 23 H 0.029 0.971 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.213 0.787 30 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.187 -17.373 0.006 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.045 4.045 10 C -0.131 4.131 11 C -0.001 4.001 12 O -0.257 6.257 13 C 0.367 3.633 14 O -0.392 6.392 15 C -0.092 4.092 16 C -0.026 4.026 17 N -0.139 5.139 18 C -0.033 4.033 19 C -0.060 4.060 20 Cl 0.037 6.963 21 N -0.132 5.132 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 23.138 -16.996 0.008 28.709 hybrid contribution -0.843 0.734 -0.018 1.118 sum 22.295 -16.262 -0.010 27.595 Atomic orbital electron populations 1.70070 1.08401 1.28305 1.52374 1.26045 0.95664 1.03682 0.93942 0.85624 0.79590 0.77897 0.79356 1.18997 1.20987 1.16593 1.21413 0.91839 0.93298 1.50870 0.94951 1.19440 0.94181 0.93422 0.97461 1.21328 0.90839 0.98548 1.02424 1.23380 0.95167 0.78131 1.03392 1.86655 1.22715 1.33905 1.82401 1.20680 0.81441 0.88215 0.72914 1.90863 1.60814 1.41330 1.46143 1.21020 0.92209 0.90123 1.05842 1.24244 0.91821 0.97468 0.89024 1.68994 1.36851 0.98402 1.09652 1.24754 0.87419 1.01871 0.89272 1.23273 0.91776 0.89504 1.01489 1.98467 1.66757 1.34976 1.96127 1.67693 1.40550 0.98836 1.06091 0.92388 0.95299 0.95401 0.92126 0.92148 0.90151 0.90071 0.77072 0.75154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.54 -31.12 9.66 25.60 0.25 -30.87 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.09 -3.70 5.53 30.60 0.17 -3.54 16 11 C 0.07 2.37 5.47 71.98 0.39 2.76 16 12 O -0.34 -11.02 10.05 -55.94 -0.56 -11.58 16 13 C 0.53 14.68 7.95 70.42 0.56 15.24 16 14 O -0.50 -14.78 16.13 20.06 0.32 -14.45 16 15 C 0.05 1.06 6.75 41.85 0.28 1.34 16 16 C 0.13 2.18 10.77 84.94 0.91 3.10 16 17 N -0.43 -6.06 10.49 -193.98 -2.03 -8.09 16 18 C 0.13 1.44 11.02 84.82 0.93 2.38 16 19 C 0.11 1.89 7.29 84.85 0.62 2.51 16 20 Cl 0.01 0.13 29.13 -2.72 -0.08 0.05 16 21 N -0.41 -9.82 10.27 -175.34 -1.80 -11.62 16 22 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 23 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 24 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 29 H 0.21 2.64 7.65 -2.91 -0.02 2.62 16 30 H 0.23 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -70.63 291.53 3.85 -66.78 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: 1.11 Total: -0.42 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.70 Total: -6.64 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.54 Total: -79.45 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.24 Total: -26.04 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.05 kcal Total: -70.63 3.85 -66.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758638147.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.949 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds