Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47574 * 2 1 4 4 O 1.42904 * 109.47279 * 239.99888 * 2 1 3 5 5 C 1.35922 * 116.99682 * 84.82857 * 4 2 1 6 6 C 1.38721 * 120.04669 * 354.62442 * 5 4 2 7 7 C 1.38139 * 119.96413 * 179.97438 * 6 5 4 8 8 C 1.38366 * 120.03776 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.95832 * 179.97438 * 8 7 6 10 10 C 1.38370 * 120.08901 * 0.25077 * 8 7 6 11 11 C 1.38143 * 120.03833 * 359.49492 * 10 8 7 12 12 C 1.50700 * 109.47278 * 120.00202 * 2 1 3 13 13 O 1.21211 * 120.00392 * 119.99536 * 12 2 1 14 14 O 1.34316 * 119.99891 * 300.00037 * 12 2 1 15 15 C 1.34926 * 117.00047 * 180.02562 * 14 12 2 16 16 H 1.07996 * 119.99758 * 359.97438 * 15 14 12 17 17 C 1.38751 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31438 * 120.00291 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99468 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47295 * 59.99914 * 19 17 15 21 21 H 1.48497 * 109.46536 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46909 * 299.99577 * 19 17 15 23 23 H 1.09004 * 109.47152 * 299.99968 * 1 2 3 24 24 H 1.09001 * 109.47594 * 59.99671 * 1 2 3 25 25 H 1.09003 * 109.47574 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.01830 * 359.97438 * 6 5 4 27 27 H 1.07999 * 119.98299 * 179.97438 * 7 6 5 28 28 H 1.08000 * 119.98219 * 179.72167 * 10 8 7 29 29 H 1.07997 * 120.02404 * 180.25826 * 11 10 8 30 30 H 0.96993 * 120.00190 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1091 0.0618 -2.3052 6 6 1.6547 1.3723 -2.3288 7 6 1.7605 2.1184 -3.4865 8 6 2.3188 1.5592 -4.6224 9 17 2.4500 2.4985 -6.0764 10 6 2.7673 0.2504 -4.6026 11 6 2.6681 -0.4972 -3.4452 12 6 2.0323 -0.7104 1.2304 13 8 2.7291 -1.6960 1.1192 14 8 1.7078 -0.2516 2.4504 15 6 2.1907 -0.9335 3.5097 16 1 2.8077 -1.8062 3.3544 17 6 1.8936 -0.5143 4.7986 18 7 1.1422 0.5475 4.9875 19 14 2.5616 -1.4589 6.2652 20 1 4.0459 -1.4574 6.2206 21 1 2.1039 -0.8116 7.5209 22 1 2.0663 -2.8581 6.2200 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.2186 1.8090 -1.4425 27 1 1.4065 3.1386 -3.5054 28 1 3.1987 -0.1858 -5.4914 29 1 3.0221 -1.5174 -3.4288 30 1 0.9348 0.8408 5.8885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758702779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = -116.110264 kcal Electronic energy + Delta-G solvation = -17692.096827 eV Core-core repulsion = 14478.537969 eV Total energy + Delta-G solvation = -3213.558858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78086 -40.77872 -38.86813 -37.35335 -37.02012 -34.42026 -33.32094 -31.98534 -30.50951 -27.79072 -25.78693 -24.18639 -23.42372 -21.72926 -19.98983 -19.51898 -18.58505 -17.67639 -17.25203 -17.01959 -16.38876 -16.16457 -16.03332 -15.57478 -14.89387 -14.66287 -14.31755 -14.15597 -13.69677 -13.48494 -13.29831 -13.13971 -13.06478 -12.68784 -12.40861 -12.27991 -12.16699 -12.05795 -11.78394 -11.68565 -11.02604 -10.73508 -10.15867 -9.20568 -8.58489 -6.39184 0.13538 0.19645 1.15400 1.22355 1.29895 1.45178 1.55390 1.60776 2.21638 2.56198 2.79608 2.92457 3.57404 3.73790 3.81379 3.84377 4.08720 4.28662 4.35553 4.47799 4.61645 4.70504 4.89549 4.96163 5.08384 5.11629 5.18130 5.22662 5.52088 5.76588 6.20910 6.54238 6.85911 7.63107 8.61005 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.050150 B = 0.003470 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.196027 B = 8066.124918 C = 8305.365684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 H 0.123 0.877 4 O -0.309 6.309 5 C 0.116 3.884 6 C -0.202 4.202 7 C -0.065 4.065 8 C -0.081 4.081 9 Cl -0.067 7.067 10 C -0.065 4.065 11 C -0.148 4.148 12 C 0.394 3.606 13 O -0.572 6.572 14 O -0.226 6.226 15 C -0.427 4.427 16 H 0.081 0.919 17 C 0.003 3.997 18 N -0.895 5.895 19 Si 1.016 2.984 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.262 1.262 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.153 0.847 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.144 0.856 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 4.856 -16.969 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.140 0.860 4 O -0.223 6.223 5 C 0.071 3.929 6 C -0.221 4.221 7 C -0.084 4.084 8 C -0.108 4.108 9 Cl -0.038 7.038 10 C -0.083 4.083 11 C -0.167 4.167 12 C 0.241 3.759 13 O -0.469 6.469 14 O -0.134 6.134 15 C -0.502 4.502 16 H 0.099 0.901 17 C -0.198 4.198 18 N -0.531 5.531 19 Si 0.835 3.165 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.187 1.187 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.758 4.629 -16.906 17.545 hybrid contribution 0.324 -0.342 0.691 0.837 sum -0.434 4.287 -16.215 16.778 Atomic orbital electron populations 1.22256 0.90065 1.04145 1.05388 1.21542 0.97078 0.95912 0.79808 0.85969 1.86152 1.81408 1.38315 1.16388 1.19496 0.95788 0.91283 0.86344 1.21500 1.06292 0.93456 1.00849 1.21080 0.96323 1.00956 0.90023 1.20936 1.06877 0.93673 0.89280 1.98361 1.96994 1.72536 1.35901 1.21058 0.97384 0.91722 0.98162 1.20598 1.03343 1.02195 0.90561 1.23756 0.80911 0.84724 0.86487 1.90554 1.39805 1.28799 1.87732 1.83853 1.64303 1.52232 1.13055 1.21406 1.33828 1.12023 0.82954 0.90145 1.26489 0.95824 0.97302 1.00191 1.70035 1.34867 1.23838 1.24406 0.84705 0.78848 0.77933 0.75019 1.18695 1.18077 1.18665 0.89500 0.87608 0.91959 0.82979 0.82376 0.82001 0.83819 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.10 71.98 0.66 -4.25 16 2 C 0.11 4.19 2.75 29.85 0.08 4.27 16 3 H 0.12 3.88 6.32 -2.39 -0.02 3.86 16 4 O -0.31 -11.24 9.33 -73.62 -0.69 -11.92 16 5 C 0.12 3.30 6.60 22.50 0.15 3.44 16 6 C -0.20 -4.68 8.24 22.36 0.18 -4.50 16 7 C -0.07 -1.27 9.82 22.28 0.22 -1.05 16 8 C -0.08 -1.59 6.32 22.33 0.14 -1.45 16 9 Cl -0.07 -1.16 28.95 -2.72 -0.08 -1.24 16 10 C -0.06 -1.27 9.82 22.28 0.22 -1.05 16 11 C -0.15 -3.61 9.99 22.36 0.22 -3.38 16 12 C 0.39 20.14 7.28 71.24 0.52 20.66 16 13 O -0.57 -32.97 15.74 27.21 0.43 -32.54 16 14 O -0.23 -13.02 9.65 14.76 0.14 -12.87 16 15 C -0.43 -25.62 9.65 67.94 0.66 -24.97 16 16 H 0.08 4.95 6.86 -2.91 -0.02 4.93 16 17 C 0.00 0.19 5.49 84.87 0.47 0.65 16 18 N -0.90 -51.07 13.67 21.62 0.30 -50.78 16 19 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H 0.09 2.76 8.11 -2.38 -0.02 2.74 16 24 H 0.11 2.39 6.90 -2.39 -0.02 2.37 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.15 3.14 5.42 -2.91 -0.02 3.13 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 30 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -71.55 287.50 6.81 -64.73 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.17 Total: 11.69 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 3.51 Total: -11.62 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.30 Total: -50.78 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.12 Total: -57.34 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -71.55 6.81 -64.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758702779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.376 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds