Wall clock time and date at job start Mon Mar 30 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35751 * 117.00056 * 2 1 4 4 C 1.39177 * 120.38141 * 0.27290 * 3 2 1 5 5 C 1.38337 * 118.47274 * 180.26302 * 4 3 2 6 6 C 1.39507 * 119.15673 * 359.73257 * 5 4 3 7 7 C 1.47762 * 119.66220 * 180.02562 * 6 5 4 8 8 O 1.21601 * 119.99952 * 6.14224 * 7 6 5 9 9 N 1.34782 * 120.00473 * 186.14894 * 7 6 5 10 10 C 1.46495 * 120.00228 * 185.41372 * 9 7 6 11 11 C 1.36830 * 119.99564 * 5.41426 * 9 7 6 12 12 H 1.08002 * 119.99821 * 40.03495 * 11 9 7 13 13 C 1.39068 * 119.99841 * 220.03393 * 11 9 7 14 14 N 1.31349 * 119.99981 * 9.10878 * 13 11 9 15 15 Si 1.86804 * 119.99974 * 189.10873 * 13 11 9 16 16 H 1.48506 * 109.46932 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47099 * 120.00205 * 15 13 11 18 18 H 1.48496 * 109.47052 * 240.00271 * 15 13 11 19 19 N 1.32907 * 120.67747 * 359.97438 * 6 5 4 20 20 C 1.31461 * 121.66892 * 0.02562 * 19 6 5 21 21 Cl 1.73595 * 119.61246 * 180.02562 * 20 19 6 22 22 H 1.08996 * 109.46762 * 59.99920 * 1 2 3 23 23 H 1.08993 * 109.47318 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47043 * 300.00427 * 1 2 3 25 25 H 1.08004 * 120.75920 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.42254 * 179.70833 * 5 4 3 27 27 H 1.09003 * 109.46689 * 84.73896 * 10 9 7 28 28 H 1.09006 * 109.46861 * 204.73438 * 10 9 7 29 29 H 1.08997 * 109.47525 * 324.73858 * 10 9 7 30 30 H 0.97003 * 119.99990 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2951 2.3818 0.0057 5 6 1.9638 3.5928 -0.0001 6 6 3.3589 3.5988 -0.0057 7 6 4.0845 4.8860 -0.0114 8 8 3.4715 5.9301 0.1016 9 7 5.4259 4.9029 -0.1418 10 6 6.1570 6.1674 -0.0287 11 6 6.1048 3.7390 -0.3799 12 1 5.6961 3.0046 -1.0582 13 6 7.3209 3.5018 0.2515 14 7 7.7324 4.3039 1.2068 15 14 8.3694 2.0424 -0.2590 16 1 7.6873 1.3004 -1.3497 17 1 9.6891 2.5250 -0.7392 18 1 8.5653 1.1422 0.9056 19 7 4.0419 2.4587 -0.0050 20 6 3.4368 1.2916 0.0004 21 17 4.3819 -0.1645 0.0017 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2156 2.3468 0.0098 26 1 1.4129 4.5217 -0.0006 27 1 6.3570 6.3786 1.0217 28 1 7.1001 6.0914 -0.5701 29 1 5.5579 6.9727 -0.4537 30 1 8.5805 4.1382 1.6475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767931294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:32 Heat of formation + Delta-G solvation = -39.446590 kcal Electronic energy + Delta-G solvation = -18587.708833 eV Core-core repulsion = 15409.767113 eV Total energy + Delta-G solvation = -3177.941721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83698 -40.31611 -38.85127 -37.50896 -36.77186 -33.55659 -33.13154 -31.79424 -28.82581 -28.04668 -26.65336 -24.50605 -24.24627 -21.42481 -19.87317 -19.08425 -18.51197 -17.63533 -16.95788 -16.79229 -16.30186 -16.03277 -15.92136 -15.38282 -14.89731 -14.84475 -14.53559 -13.83985 -13.65261 -13.20569 -13.06946 -12.78404 -12.63133 -12.58892 -12.35528 -12.24363 -12.22034 -12.01199 -11.07900 -11.00762 -10.75008 -10.22055 -9.56053 -9.32698 -8.28512 -5.96229 -0.32529 0.08865 0.85783 1.39071 1.44265 1.57486 1.86277 2.08751 2.32171 2.79764 2.81779 3.16848 3.47799 3.65365 3.93350 4.01666 4.28716 4.40541 4.45984 4.68227 4.76153 4.83550 4.88209 4.98158 5.18688 5.20403 5.60627 5.92700 6.09118 6.46312 6.72143 7.15416 7.47929 7.89315 8.77285 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.008666 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.551247 B = 3230.295747 C = 4619.885528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.113 3.887 4 C -0.147 4.147 5 C -0.076 4.076 6 C 0.056 3.944 7 C 0.490 3.510 8 O -0.629 6.629 9 N -0.430 5.430 10 C 0.123 3.877 11 C -0.302 4.302 12 H 0.106 0.894 13 C 0.006 3.994 14 N -0.901 5.901 15 Si 0.967 3.033 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.281 1.281 19 N -0.399 5.399 20 C 0.111 3.889 21 Cl -0.034 7.034 22 H 0.076 0.924 23 H 0.126 0.874 24 H 0.074 0.926 25 H 0.200 0.800 26 H 0.163 0.837 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 -9.419 -2.872 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.062 3.938 4 C -0.172 4.172 5 C -0.097 4.097 6 C -0.081 4.081 7 C 0.280 3.720 8 O -0.518 6.518 9 N -0.145 5.145 10 C -0.020 4.020 11 C -0.431 4.431 12 H 0.123 0.877 13 C -0.197 4.197 14 N -0.540 5.540 15 Si 0.791 3.209 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.207 1.207 19 N -0.112 5.112 20 C -0.058 4.058 21 Cl -0.005 7.005 22 H 0.094 0.906 23 H 0.144 0.856 24 H 0.093 0.907 25 H 0.217 0.783 26 H 0.181 0.819 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.115 -9.144 -2.712 15.418 hybrid contribution 0.188 -0.492 0.149 0.547 sum -11.926 -9.635 -2.563 15.545 Atomic orbital electron populations 1.23598 0.75178 1.06511 1.03214 1.86150 1.24438 1.24274 1.87260 1.19793 0.90540 0.87166 0.96319 1.21941 1.02666 0.88910 1.03728 1.22160 0.92579 1.00575 0.94375 1.20955 0.92139 0.90691 1.04357 1.18302 0.83269 0.87579 0.82830 1.90577 1.68491 1.33302 1.59433 1.43679 1.04688 1.08457 1.57640 1.21246 0.95205 0.85036 1.00488 1.19969 1.02391 0.95968 1.24816 0.87698 1.26133 0.99295 1.00002 0.94221 1.70004 1.21943 1.39383 1.22660 0.85232 0.78139 0.78704 0.78793 1.18071 1.19862 1.20698 1.67873 1.38808 0.96700 1.07855 1.21416 0.86852 0.89719 1.07818 1.98359 1.74050 1.31281 1.96844 0.90577 0.85603 0.90735 0.78339 0.81931 0.94235 0.92099 0.93128 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.31 9.96 -90.77 -0.90 -8.21 16 3 C 0.11 3.31 6.71 22.77 0.15 3.46 16 4 C -0.15 -3.66 9.12 22.52 0.21 -3.46 16 5 C -0.08 -2.53 9.62 22.60 0.22 -2.31 16 6 C 0.06 2.50 6.62 41.81 0.28 2.78 16 7 C 0.49 25.47 7.60 86.76 0.66 26.12 16 8 O -0.63 -33.71 15.97 -4.04 -0.06 -33.77 16 9 N -0.43 -23.26 2.92 -662.29 -1.93 -25.19 16 10 C 0.12 6.24 8.80 127.77 1.12 7.37 16 11 C -0.30 -16.35 7.38 84.11 0.62 -15.73 16 12 H 0.11 5.68 6.17 -2.91 -0.02 5.67 16 13 C 0.01 0.32 5.14 84.96 0.44 0.75 16 14 N -0.90 -50.27 11.73 21.68 0.25 -50.02 16 15 Si 0.97 43.05 29.56 68.60 2.03 45.07 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 N -0.40 -18.03 6.46 -175.54 -1.13 -19.17 16 20 C 0.11 4.21 7.29 85.03 0.62 4.83 16 21 Cl -0.03 -1.21 28.66 -2.72 -0.08 -1.28 16 22 H 0.08 0.66 7.70 -2.39 -0.02 0.65 16 23 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.67 7.68 -2.39 -0.02 0.66 16 25 H 0.20 2.78 6.43 -2.91 -0.02 2.76 16 26 H 0.16 4.97 7.64 -2.91 -0.02 4.95 16 27 H 0.04 2.09 7.72 -2.39 -0.02 2.08 16 28 H 0.06 3.01 7.70 -2.38 -0.02 2.99 16 29 H 0.05 2.39 7.51 -2.39 -0.02 2.37 16 30 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -68.99 279.70 4.78 -64.21 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.18 Total: 3.34 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 5.43 Total: 25.02 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -2.81 Total: -94.38 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.97 Total: -41.98 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -68.99 4.78 -64.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767931294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.762 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds