Wall clock time and date at job start Mon Mar 30 2020 00:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38195 * 119.55039 * 2 1 4 4 C 1.38602 * 119.24783 * 179.73735 * 3 2 1 5 5 C 1.39053 * 118.38765 * 0.52516 * 4 3 2 6 6 O 1.35933 * 120.47674 * 179.75673 * 5 4 3 7 7 C 1.42902 * 116.99897 * 359.97438 * 6 5 4 8 8 C 1.50700 * 109.46977 * 180.02562 * 7 6 5 9 9 O 1.21298 * 119.99756 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00134 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00169 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00422 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00337 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00367 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99484 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47241 * 90.00297 * 15 13 11 17 17 H 1.48509 * 109.47007 * 209.99926 * 15 13 11 18 18 H 1.48501 * 109.47588 * 329.99840 * 15 13 11 19 19 C 1.38863 * 119.04354 * 359.73631 * 5 4 3 20 20 Cl 1.73599 * 119.67048 * 180.02562 * 19 5 4 21 21 N 1.31888 * 119.54764 * 180.27145 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72669 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.72266 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72897 * 1 2 3 25 25 H 1.08006 * 120.37843 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.80394 * 180.23993 * 4 3 2 27 27 H 1.09004 * 109.47098 * 299.99662 * 7 6 5 28 28 H 1.09001 * 109.47112 * 60.00232 * 7 6 5 29 29 H 0.97006 * 120.00001 * 359.97438 * 10 8 7 30 30 H 0.96999 * 120.00205 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2022 0.0000 4 6 3.5746 1.1949 0.0055 5 6 4.2293 -0.0319 -0.0003 6 8 5.5874 -0.0886 -0.0002 7 6 6.2887 1.1565 0.0056 8 6 7.7732 0.8969 0.0042 9 8 8.1896 -0.2423 -0.0007 10 7 8.6380 1.9305 0.0094 11 6 9.9885 1.6944 0.0076 12 1 10.3594 0.6801 0.0024 13 6 10.8802 2.7600 0.0125 14 7 12.1747 2.5337 0.0113 15 14 10.2388 4.5144 0.0208 16 1 10.0690 4.9728 1.4230 17 1 11.2076 5.3990 -0.6752 18 1 8.9300 4.5664 -0.6789 19 6 3.4756 -1.1982 -0.0058 20 17 4.2761 -2.7386 -0.0124 21 7 2.1575 -1.1473 -0.0054 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3634 0.8924 -0.5095 24 1 -0.3633 -0.8875 -0.5180 25 1 1.6474 2.1369 0.0004 26 1 4.1325 2.1196 0.0096 27 1 6.0196 1.7292 -0.8820 28 1 6.0191 1.7213 0.8980 29 1 8.3050 2.8416 0.0137 30 1 12.7971 3.2776 0.0143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777553097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:11 Heat of formation + Delta-G solvation = -64.877976 kcal Electronic energy + Delta-G solvation = -17530.038710 eV Core-core repulsion = 14350.994202 eV Total energy + Delta-G solvation = -3179.044508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85438 -40.48340 -39.07975 -37.62153 -36.10199 -33.86553 -33.28935 -33.18201 -30.35421 -27.90393 -26.31583 -24.74894 -23.14976 -21.47797 -20.47064 -19.50215 -18.39101 -17.47097 -17.45396 -17.31632 -16.71810 -15.89726 -15.68314 -15.18278 -15.05287 -14.93800 -14.67196 -14.22329 -13.75851 -13.66780 -13.12586 -13.02304 -12.82961 -12.57226 -12.44400 -12.23943 -12.18392 -11.97863 -11.57051 -10.79781 -10.76980 -10.57461 -10.33001 -9.32040 -8.44608 -6.08706 -0.14064 0.08101 0.85185 1.30384 1.36249 1.45932 1.65187 1.79776 2.22817 2.50448 2.94364 3.09853 3.37733 3.59202 3.73597 3.87746 3.98307 4.10433 4.17240 4.29254 4.71545 4.85239 4.88833 4.96099 5.09848 5.43763 5.49643 5.85872 6.03205 6.51953 6.68387 6.79655 7.27637 7.82829 8.72602 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.004255 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.476817 B = 6579.085241 C = 7484.115213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.091 3.909 3 C -0.109 4.109 4 C -0.146 4.146 5 C 0.076 3.924 6 O -0.302 6.302 7 C 0.055 3.945 8 C 0.444 3.556 9 O -0.614 6.614 10 N -0.574 5.574 11 C -0.336 4.336 12 H 0.053 0.947 13 C -0.012 4.012 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.254 1.254 17 H -0.276 1.276 18 H -0.222 1.222 19 C 0.119 3.881 20 Cl -0.042 7.042 21 N -0.468 5.468 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.186 0.814 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.395 0.605 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.990 6.968 0.001 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.048 4.048 3 C -0.128 4.128 4 C -0.172 4.172 5 C 0.026 3.974 6 O -0.214 6.214 7 C -0.023 4.023 8 C 0.232 3.768 9 O -0.499 6.499 10 N -0.216 5.216 11 C -0.465 4.465 12 H 0.071 0.929 13 C -0.212 4.212 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.178 1.178 17 H -0.201 1.201 18 H -0.145 1.145 19 C -0.045 4.045 20 Cl -0.014 7.014 21 N -0.181 5.181 22 H 0.108 0.892 23 H 0.127 0.873 24 H 0.088 0.912 25 H 0.210 0.790 26 H 0.203 0.797 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.232 0.768 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.740 5.176 -0.010 26.256 hybrid contribution 1.339 0.899 0.016 1.613 sum -24.401 6.075 0.007 25.146 Atomic orbital electron populations 1.20794 0.85365 1.04798 1.04294 1.21879 0.98850 0.86928 0.97154 1.22406 0.93153 1.00748 0.96526 1.22228 0.96529 0.96568 1.01913 1.19869 0.83637 0.94577 0.99300 1.86273 1.14687 1.32414 1.87993 1.22603 0.87945 0.85184 1.06558 1.20377 0.88602 0.85134 0.82720 1.90616 1.80266 1.23981 1.54990 1.41738 1.05166 1.07691 1.67025 1.18983 0.81028 0.95213 1.51270 0.92850 1.26203 0.94818 1.04678 0.95460 1.69802 1.03106 1.34889 1.49209 0.85344 0.80275 0.75549 0.80220 1.17815 1.20059 1.14527 1.20960 0.89497 0.86355 1.07674 1.98405 1.77397 1.28854 1.96735 1.66898 1.05999 1.32200 1.13015 0.89172 0.87333 0.91208 0.78984 0.79654 0.85651 0.85560 0.76799 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.17 71.24 0.72 -0.22 16 2 C 0.09 1.63 6.78 42.54 0.29 1.92 16 3 C -0.11 -1.42 9.73 22.35 0.22 -1.20 16 4 C -0.15 -2.53 9.14 22.55 0.21 -2.32 16 5 C 0.08 2.11 6.70 22.62 0.15 2.26 16 6 O -0.30 -10.48 9.14 -73.76 -0.67 -11.15 16 7 C 0.06 1.59 5.24 71.24 0.37 1.96 16 8 C 0.44 19.92 7.86 87.66 0.69 20.61 16 9 O -0.61 -35.62 16.08 15.95 0.26 -35.36 16 10 N -0.57 -25.79 5.09 -306.99 -1.56 -27.35 16 11 C -0.34 -19.29 10.16 84.04 0.85 -18.44 16 12 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 14 N -0.93 -54.96 13.96 21.66 0.30 -54.66 16 15 Si 0.97 36.10 27.74 68.60 1.90 38.00 16 16 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 17 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.22 -6.58 6.52 99.48 0.65 -5.93 16 19 C 0.12 3.63 7.29 84.83 0.62 4.25 16 20 Cl -0.04 -1.43 28.66 -2.72 -0.08 -1.50 16 21 N -0.47 -12.48 10.25 -174.49 -1.79 -14.27 16 22 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.11 0.40 8.07 -2.39 -0.02 0.38 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 26 H 0.19 1.81 6.45 -2.91 -0.02 1.79 16 27 H 0.13 2.53 7.70 -2.38 -0.02 2.52 16 28 H 0.13 2.53 7.70 -2.39 -0.02 2.51 16 29 H 0.40 13.78 5.76 -92.70 -0.53 13.24 16 30 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -84.36 285.92 3.55 -80.82 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.60 Total: 16.86 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.59 Total: 8.62 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.05 Total: -96.28 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.42 Total: -46.51 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 1.90 Total: 38.00 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -84.36 3.55 -80.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777553097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.939 kcal (2) G-P(sol) polarization free energy of solvation -84.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds