Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47563 * 2 1 4 4 C 1.35645 * 116.99803 * 179.97438 * 3 2 1 5 5 C 1.38619 * 120.15138 * 0.02629 * 4 3 2 6 6 C 1.38219 * 120.08028 * 180.02562 * 5 4 3 7 7 Cl 1.73604 * 119.80852 * 179.97438 * 6 5 4 8 8 C 1.38720 * 120.38218 * 359.97438 * 6 5 4 9 9 C 1.37693 * 120.29486 * 359.95155 * 8 6 5 10 10 C 1.39833 * 119.91450 * 0.07111 * 9 8 6 11 11 C 1.47291 * 120.18900 * 180.22439 * 10 9 8 12 12 O 1.21549 * 119.99997 * 179.72380 * 11 10 9 13 13 O 1.34789 * 119.99922 * 359.72716 * 11 10 9 14 14 C 1.34865 * 116.99950 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99641 * 359.97438 * 14 13 11 16 16 C 1.38785 * 119.99858 * 180.02562 * 14 13 11 17 17 N 1.31431 * 120.00243 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99990 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47423 * 89.99901 * 18 16 14 20 20 H 1.48508 * 109.47258 * 209.99747 * 18 16 14 21 21 H 1.48505 * 109.47120 * 329.99597 * 18 16 14 22 22 H 1.08998 * 109.46852 * 299.99902 * 1 2 3 23 23 H 1.09009 * 109.47033 * 59.99472 * 1 2 3 24 24 H 1.08998 * 109.47550 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46852 * 240.00098 * 2 1 3 26 26 H 1.08996 * 109.46769 * 120.00622 * 2 1 3 27 27 H 1.07999 * 119.96064 * 359.97438 * 5 4 3 28 28 H 1.07995 * 119.85446 * 180.02562 * 8 6 5 29 29 H 1.08004 * 120.04413 * 180.02562 * 9 8 6 30 30 H 0.97002 * 120.00464 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3512 1.5248 0.0005 5 6 4.1984 0.4276 0.0005 6 6 5.5685 0.6103 0.0016 7 17 6.6229 -0.7688 0.0022 8 6 6.1058 1.8892 0.0022 9 6 5.2787 2.9901 0.0007 10 6 3.8908 2.8196 0.0001 11 6 3.0005 3.9929 -0.0065 12 8 1.7946 3.8408 -0.0121 13 8 3.5230 5.2354 -0.0064 14 6 2.6527 6.2657 -0.0132 15 1 1.5898 6.0745 -0.0187 16 6 3.1231 7.5714 -0.0140 17 7 4.4166 7.8039 -0.0087 18 14 1.9176 8.9983 -0.0226 19 1 1.5919 9.3796 1.3751 20 1 2.5276 10.1574 -0.7225 21 1 0.6751 8.5924 -0.7274 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7874 -0.5711 0.0005 28 1 7.1775 2.0220 0.0026 29 1 5.7014 3.9839 0.0007 30 1 4.7454 8.7165 -0.0089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778891308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = -120.275433 kcal Electronic energy + Delta-G solvation = -17994.998906 eV Core-core repulsion = 14781.259433 eV Total energy + Delta-G solvation = -3213.739473 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68431 -40.47340 -38.81565 -37.46055 -37.07932 -34.31110 -32.91722 -32.24531 -30.76344 -27.66662 -25.28332 -24.81974 -22.80628 -22.01841 -19.85007 -19.58693 -18.61876 -17.38622 -17.23776 -16.85352 -16.42360 -16.35622 -16.10128 -15.52416 -14.71842 -14.67345 -14.45133 -13.70070 -13.67269 -13.47907 -13.28499 -13.18966 -12.94580 -12.49979 -12.26513 -12.17665 -12.15897 -12.06421 -11.97992 -11.61635 -11.00785 -10.69259 -10.07952 -9.41974 -8.55192 -6.31403 -0.46685 0.19295 0.88768 1.34274 1.36301 1.51621 1.71274 2.09172 2.13273 2.57295 2.69714 3.02816 3.61054 3.84994 3.93627 4.02720 4.08599 4.18180 4.32370 4.43764 4.56014 4.82649 4.90634 4.93066 5.05691 5.12561 5.19689 5.25269 5.46025 5.82606 6.32321 6.64876 6.89821 7.76063 8.65645 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.005389 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.630148 B = 5194.685728 C = 6555.861749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.033 3.967 3 O -0.309 6.309 4 C 0.187 3.813 5 C -0.205 4.205 6 C 0.033 3.967 7 Cl -0.039 7.039 8 C -0.151 4.151 9 C -0.021 4.021 10 C -0.166 4.166 11 C 0.435 3.565 12 O -0.562 6.562 13 O -0.235 6.235 14 C -0.418 4.418 15 H 0.079 0.921 16 C -0.002 4.002 17 N -0.898 5.898 18 Si 1.018 2.982 19 H -0.260 1.260 20 H -0.257 1.257 21 H -0.265 1.265 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -17.232 0.044 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 O -0.221 6.221 4 C 0.139 3.861 5 C -0.224 4.224 6 C 0.005 3.995 7 Cl -0.010 7.010 8 C -0.170 4.170 9 C -0.040 4.040 10 C -0.168 4.168 11 C 0.284 3.716 12 O -0.460 6.460 13 O -0.144 6.144 14 C -0.493 4.493 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.535 5.535 18 Si 0.836 3.164 19 H -0.184 1.184 20 H -0.181 1.181 21 H -0.190 1.190 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.193 0.807 28 H 0.187 0.813 29 H 0.160 0.840 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.012 -17.083 0.039 17.202 hybrid contribution -0.450 0.612 0.000 0.760 sum 1.562 -16.471 0.039 16.545 Atomic orbital electron populations 1.21791 0.91902 1.04231 1.02585 1.23328 0.97140 0.80407 1.03217 1.86436 1.17578 1.31638 1.86435 1.18883 0.83762 0.91660 0.91836 1.21147 0.91733 0.98981 1.10571 1.20915 0.90658 0.89140 0.98744 1.98381 1.65052 1.41194 1.96372 1.21112 1.01923 0.89116 1.04823 1.21348 0.90135 1.00666 0.91831 1.18890 0.93950 0.89047 1.14927 1.21401 0.87455 0.84752 0.77994 1.90628 1.17226 1.87002 1.51171 1.83916 1.40023 1.13504 1.76977 1.21440 0.89590 0.83723 1.54587 0.90289 1.26519 0.99242 0.99807 0.94673 1.70050 1.14172 1.22842 1.46433 0.84629 0.76770 0.75402 0.79560 1.18415 1.18132 1.18957 0.92852 0.92873 0.86807 0.89791 0.89775 0.80749 0.81336 0.84002 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 10.28 71.98 0.74 -2.41 16 2 C 0.03 0.77 5.46 71.98 0.39 1.16 16 3 O -0.31 -11.51 8.21 -68.66 -0.56 -12.07 16 4 C 0.19 6.75 6.70 22.86 0.15 6.90 16 5 C -0.21 -5.38 8.80 22.36 0.20 -5.18 16 6 C 0.03 0.80 6.32 22.38 0.14 0.95 16 7 Cl -0.04 -0.75 28.94 -2.72 -0.08 -0.83 16 8 C -0.15 -4.10 9.80 22.26 0.22 -3.88 16 9 C -0.02 -0.77 9.61 22.53 0.22 -0.55 16 10 C -0.17 -7.19 5.89 -20.02 -0.12 -7.31 16 11 C 0.43 24.21 7.82 70.20 0.55 24.76 16 12 O -0.56 -33.73 14.41 26.69 0.38 -33.34 16 13 O -0.24 -14.49 8.99 10.65 0.10 -14.39 16 14 C -0.42 -26.23 9.65 67.95 0.66 -25.57 16 15 H 0.08 5.07 6.86 -2.91 -0.02 5.05 16 16 C 0.00 -0.11 5.49 84.88 0.47 0.36 16 17 N -0.90 -53.23 13.67 21.63 0.30 -52.94 16 18 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.55 7.66 -2.39 -0.02 1.53 16 26 H 0.08 1.55 7.66 -2.39 -0.02 1.53 16 27 H 0.18 3.29 6.30 -2.91 -0.02 3.27 16 28 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.14 5.53 7.61 -2.91 -0.02 5.51 16 30 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -76.63 287.80 6.95 -69.68 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.17 Total: 8.47 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 3.61 Total: -10.77 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.30 Total: -52.94 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -0.08 Total: -59.81 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -76.63 6.95 -69.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778891308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.590 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds