Wall clock time and date at job start Mon Mar 30 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38640 * 120.80523 * 2 1 4 4 C 1.38165 * 119.24991 * 180.27439 * 3 2 1 5 5 N 1.31912 * 120.90091 * 359.71746 * 4 3 2 6 6 C 1.31896 * 121.75961 * 0.02562 * 5 4 3 7 7 Cl 1.73602 * 119.67143 * 179.97438 * 6 5 4 8 8 C 1.38906 * 120.65354 * 0.02562 * 6 5 4 9 9 O 1.35933 * 120.47320 * 179.97438 * 8 6 5 10 10 C 1.42905 * 117.00265 * 90.00020 * 9 8 6 11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99727 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.37091 * 119.99763 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00286 * 0.02562 * 14 13 11 16 16 C 1.38956 * 120.00028 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47454 * 59.99812 * 18 16 14 20 20 H 1.48496 * 109.47302 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47261 * 299.99805 * 18 16 14 22 22 H 1.09000 * 109.47646 * 270.24479 * 1 2 3 23 23 H 1.08995 * 109.47064 * 30.25159 * 1 2 3 24 24 H 1.09007 * 109.46813 * 150.24988 * 1 2 3 25 25 H 1.07998 * 120.37579 * 359.97286 * 3 2 1 26 26 H 1.07997 * 119.54933 * 179.70488 * 4 3 2 27 27 H 1.09001 * 109.47103 * 300.00113 * 10 9 8 28 28 H 1.09004 * 109.47054 * 59.99617 * 10 9 8 29 29 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 30 30 H 0.96997 * 119.99770 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1908 0.0000 4 6 3.5981 1.1533 -0.0058 5 7 4.2446 0.0035 -0.0057 6 6 3.6073 -1.1513 -0.0006 7 17 4.5127 -2.6325 -0.0014 8 6 2.2189 -1.1939 0.0043 9 8 1.5658 -2.3861 0.0090 10 6 1.2585 -2.9526 1.2845 11 6 0.5395 -4.2630 1.0922 12 8 0.3122 -4.6713 -0.0271 13 7 0.1492 -4.9810 2.1638 14 6 -0.5054 -6.1728 1.9889 15 1 -0.7079 -6.5365 0.9923 16 6 -0.9083 -6.9129 3.0937 17 7 -0.6624 -6.4702 4.3063 18 14 -1.7996 -8.5372 2.8553 19 1 -0.9311 -9.4715 2.0951 20 1 -2.1183 -9.1261 4.1807 21 1 -3.0574 -8.3056 2.1006 22 1 -0.3634 0.0044 1.0276 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3633 -0.8923 -0.5100 25 1 1.6964 2.1370 -0.0004 26 1 4.1560 2.0780 -0.0106 27 1 2.1817 -3.1222 1.8387 28 1 0.6207 -2.2670 1.8424 29 1 0.3307 -4.6542 3.0589 30 1 -0.9434 -6.9870 5.0776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779811888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:19 Heat of formation + Delta-G solvation = -68.641417 kcal Electronic energy + Delta-G solvation = -17846.374621 eV Core-core repulsion = 14667.166917 eV Total energy + Delta-G solvation = -3179.207703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78454 -40.29073 -38.74652 -37.72340 -36.03584 -34.71601 -33.39526 -31.64029 -29.75451 -28.61865 -26.48913 -24.30395 -23.30782 -21.48970 -20.08338 -19.07471 -18.50241 -17.82806 -17.64823 -16.86148 -16.37965 -16.13380 -15.71400 -15.49331 -14.91962 -14.60743 -14.17148 -14.00848 -13.81692 -13.67719 -13.54184 -12.94979 -12.79223 -12.71212 -12.47970 -12.35300 -12.12901 -11.68955 -11.55013 -10.57139 -10.50856 -10.43049 -10.09922 -9.90353 -8.51289 -6.01429 -0.32396 -0.04940 0.74896 1.38043 1.42147 1.52745 1.90269 1.96801 2.33344 2.57470 3.14103 3.26243 3.41823 3.66444 3.76800 3.94750 4.03958 4.20506 4.23666 4.27867 4.58195 4.69760 4.74304 5.11313 5.17222 5.36973 5.38688 5.88267 6.16355 6.51805 6.60773 7.05020 7.42619 7.97566 8.65629 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.030352 B = 0.004455 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.288923 B = 6283.093103 C = 6750.850446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 C -0.139 4.139 4 C 0.115 3.885 5 N -0.493 5.493 6 C 0.140 3.860 7 Cl -0.039 7.039 8 C 0.036 3.964 9 O -0.315 6.315 10 C 0.073 3.927 11 C 0.440 3.560 12 O -0.619 6.619 13 N -0.560 5.560 14 C -0.338 4.338 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 0.995 3.005 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.269 1.269 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.193 0.807 26 H 0.211 0.789 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.399 0.601 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 18.168 -2.702 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.042 4.042 5 N -0.206 5.206 6 C -0.023 4.023 7 Cl -0.011 7.011 8 C -0.012 4.012 9 O -0.229 6.229 10 C -0.004 4.004 11 C 0.227 3.773 12 O -0.505 6.505 13 N -0.198 5.198 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.207 4.207 17 N -0.555 5.555 18 Si 0.818 3.182 19 H -0.198 1.198 20 H -0.192 1.192 21 H -0.194 1.194 22 H 0.110 0.890 23 H 0.128 0.872 24 H 0.075 0.925 25 H 0.211 0.789 26 H 0.227 0.773 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.234 0.766 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.571 17.544 -3.397 18.718 hybrid contribution -0.765 -1.119 0.541 1.460 sum 4.806 16.424 -2.856 17.350 Atomic orbital electron populations 1.20869 0.87776 1.04538 1.04214 1.21070 0.98910 0.91290 0.94566 1.22589 0.94931 0.99190 0.99157 1.23496 0.92695 0.95102 0.92880 1.67088 1.41682 0.97697 1.14160 1.22324 0.88337 0.89564 1.02102 1.98416 1.75766 1.30502 1.96396 1.19528 0.89180 0.87283 1.05198 1.86145 1.75533 1.33080 1.28176 1.22240 1.00205 0.93263 0.84716 1.20178 0.84709 0.87410 0.85034 1.90526 1.61414 1.73093 1.25508 1.41726 1.50938 1.19513 1.07580 1.19651 1.34700 0.97754 0.94626 0.90089 1.26062 0.97880 1.02820 0.93958 1.69656 1.46775 1.40772 0.98339 0.84960 0.78450 0.76907 0.77868 1.19797 1.19237 1.19440 0.89045 0.87200 0.92538 0.78943 0.77286 0.89918 0.88212 0.76640 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 9.86 71.24 0.70 -1.51 16 2 C -0.05 -1.10 5.93 -19.58 -0.12 -1.22 16 3 C -0.14 -1.97 9.81 22.35 0.22 -1.75 16 4 C 0.11 1.86 11.17 84.66 0.95 2.81 16 5 N -0.49 -12.72 10.34 -186.32 -1.93 -14.65 16 6 C 0.14 4.30 7.29 84.84 0.62 4.92 16 7 Cl -0.04 -1.30 28.66 -2.72 -0.08 -1.38 16 8 C 0.04 1.09 5.72 22.61 0.13 1.22 16 9 O -0.31 -12.02 8.24 -73.76 -0.61 -12.62 16 10 C 0.07 2.74 6.54 71.24 0.47 3.21 16 11 C 0.44 21.85 7.86 87.66 0.69 22.53 16 12 O -0.62 -36.34 16.08 15.98 0.26 -36.09 16 13 N -0.56 -28.95 5.29 -306.99 -1.62 -30.57 16 14 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 15 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 16 C -0.01 -0.34 5.50 84.93 0.47 0.12 16 17 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 18 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.11 1.29 8.10 -2.39 -0.02 1.28 16 24 H 0.06 1.44 7.62 -2.38 -0.02 1.43 16 25 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 26 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -73.35 291.52 3.72 -69.63 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.45 Total: 17.59 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 4.93 Total: 11.95 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.27 Total: -93.46 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.35 Total: -48.71 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -73.35 3.72 -69.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779811888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.989 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds