Wall clock time and date at job start Mon Mar 30 2020 01:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99714 * 2 1 4 4 H 1.48493 * 109.47274 * 240.00120 * 3 2 1 5 5 H 1.48505 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46861 * 119.99855 * 3 2 1 7 7 C 1.37877 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21592 * 120.00086 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.40103 * 120.00200 * 0.02562 * 13 11 10 15 15 C 1.39771 * 120.00231 * 180.02562 * 14 13 11 16 16 C 1.39325 * 120.47811 * 179.97438 * 15 14 13 17 17 C 1.38458 * 118.37957 * 179.97438 * 16 15 14 18 18 C 1.38432 * 119.22491 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.55073 * 179.97438 * 18 17 16 20 20 N 1.31926 * 120.89061 * 0.25995 * 18 17 16 21 21 C 1.31857 * 121.78388 * 359.46549 * 20 18 17 22 22 H 0.96992 * 120.00675 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47228 * 59.99835 * 9 7 2 24 24 H 1.09000 * 109.47341 * 299.99737 * 9 7 2 25 25 H 0.96998 * 119.99871 * 359.97438 * 10 9 7 26 26 H 0.96999 * 119.99937 * 180.02562 * 13 11 10 27 27 H 0.97005 * 119.99369 * 359.97438 * 14 13 11 28 28 H 1.08009 * 120.81290 * 359.95581 * 16 15 14 29 29 H 1.07995 * 120.38919 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.66260 * 180.26827 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6299 -5.9076 0.0005 14 7 4.0073 -5.6516 0.0000 15 6 4.9157 -6.7139 -0.0011 16 6 6.2875 -6.4707 -0.0022 17 6 7.1482 -7.5553 -0.0027 18 6 6.6220 -8.8357 -0.0016 19 17 7.6933 -10.2017 -0.0029 20 7 5.3174 -9.0318 -0.0052 21 6 4.4639 -8.0267 0.0005 22 1 -0.4851 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5568 0.8903 25 1 3.1569 -3.4352 0.0002 26 1 2.3066 -6.8222 0.0005 27 1 4.3306 -4.7370 -0.0004 28 1 6.6704 -5.4607 -0.0029 29 1 8.2175 -7.4042 -0.0031 30 1 3.4026 -8.2267 0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:47 Heat of formation + Delta-G solvation = 41.479900 kcal Electronic energy + Delta-G solvation = -17219.235961 eV Core-core repulsion = 14077.096228 eV Total energy + Delta-G solvation = -3142.139734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68977 -39.50197 -36.99793 -36.25520 -34.43827 -33.09073 -32.43057 -31.53169 -28.45245 -27.27124 -24.33212 -23.09887 -22.91328 -20.48076 -19.04419 -18.61672 -17.33170 -16.80759 -16.11330 -15.82081 -15.31723 -14.98271 -14.68788 -14.39533 -14.34504 -13.58081 -13.28406 -13.00319 -12.80401 -12.10146 -12.09338 -11.45974 -11.43959 -11.09993 -10.96796 -10.45395 -10.23418 -9.94040 -9.87330 -9.53125 -9.44051 -8.87952 -8.15211 -7.46477 -6.26524 -4.34757 0.77401 0.93762 1.68900 1.89579 3.18268 3.23171 3.24812 3.37758 3.52635 3.58414 4.20548 4.25133 4.40956 4.57257 4.69946 5.03411 5.09838 5.27385 5.56538 5.68311 5.94677 6.31800 6.86087 7.14845 7.25208 7.38099 7.39264 7.52776 7.73222 7.88775 8.53387 8.69754 8.94244 9.32029 10.83476 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.003227 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.219716 B = 8675.953179 C = 9461.027815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.264 3.736 10 N -0.722 5.722 11 C 0.702 3.298 12 O -0.577 6.577 13 N -0.546 5.546 14 N -0.528 5.528 15 C 0.183 3.817 16 C -0.142 4.142 17 C -0.094 4.094 18 C 0.107 3.893 19 Cl -0.044 7.044 20 N -0.432 5.432 21 C 0.044 3.956 22 H 0.268 0.732 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.382 0.618 26 H 0.426 0.574 27 H 0.429 0.571 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.706 -13.507 0.002 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.451 6.451 13 N -0.304 5.304 14 N -0.255 5.255 15 C 0.073 3.927 16 C -0.174 4.174 17 C -0.115 4.115 18 C -0.060 4.060 19 Cl -0.016 7.016 20 N -0.141 5.141 21 C -0.121 4.121 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.215 0.785 26 H 0.271 0.729 27 H 0.273 0.727 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.130 -14.262 -0.003 20.077 hybrid contribution 1.291 1.694 -0.002 2.130 sum 15.422 -12.568 -0.005 19.894 Atomic orbital electron populations 1.69950 1.06116 1.27640 1.48279 1.24937 0.94936 0.99463 0.94527 0.86449 0.79420 0.82194 0.78692 1.20029 1.20980 1.20030 1.21120 0.93156 0.90308 1.54027 0.92005 1.19105 0.87666 0.80818 0.98049 1.45807 1.10744 1.04479 1.76576 1.15968 0.84156 0.80928 0.78851 1.91003 1.12201 1.82541 1.59354 1.44844 0.92407 1.09695 1.83418 1.43365 0.93950 1.06922 1.81249 1.18822 0.89454 0.88938 0.95473 1.20911 0.89991 1.00429 1.06031 1.21545 1.01403 0.90198 0.98370 1.21256 0.89264 0.87707 1.07779 1.98381 1.61180 1.44971 1.97030 1.66773 1.02369 1.35570 1.09404 1.21919 0.99193 0.85654 1.05349 0.92216 0.95304 0.95290 0.78511 0.72912 0.72735 0.83342 0.83527 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.39 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -14.09 9.28 -34.44 -0.32 -14.40 16 8 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 9 C 0.26 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.72 -14.06 5.51 -66.41 -0.37 -14.42 16 11 C 0.70 13.19 8.68 -86.92 -0.75 12.44 16 12 O -0.58 -13.34 17.18 5.28 0.09 -13.25 16 13 N -0.55 -7.38 6.23 27.63 0.17 -7.21 16 14 N -0.53 -5.66 6.46 32.50 0.21 -5.45 16 15 C 0.18 1.81 6.75 -83.61 -0.56 1.24 16 16 C -0.14 -1.15 10.04 -39.10 -0.39 -1.54 16 17 C -0.09 -0.78 9.87 -39.43 -0.39 -1.17 16 18 C 0.11 1.14 7.27 -17.44 -0.13 1.01 16 19 Cl -0.04 -0.43 29.10 -51.86 -1.51 -1.94 16 20 N -0.43 -5.18 10.33 -10.20 -0.11 -5.29 16 21 C 0.04 0.47 10.65 -17.32 -0.18 0.29 16 22 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.38 6.14 6.24 -40.82 -0.25 5.89 16 26 H 0.43 5.02 6.74 -182.60 -1.23 3.79 16 27 H 0.43 4.13 6.73 -182.59 -1.23 2.91 16 28 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 29 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.16 1.48 6.22 -52.48 -0.33 1.15 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -31.68 286.61 -8.59 -40.28 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.26 Total: 6.26 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.86 Total: 6.13 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.65 Total: -56.76 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.68 -8.59 -40.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.757 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds