Wall clock time and date at job start Mon Mar 30 2020 01:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99714 * 2 1 4 4 H 1.48493 * 109.47274 * 240.00120 * 3 2 1 5 5 H 1.48505 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46861 * 119.99855 * 3 2 1 7 7 C 1.37877 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21592 * 120.00086 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.40103 * 120.00200 * 0.02562 * 13 11 10 15 15 C 1.39771 * 120.00231 * 180.02562 * 14 13 11 16 16 C 1.39325 * 120.47811 * 179.97438 * 15 14 13 17 17 C 1.38458 * 118.37957 * 179.97438 * 16 15 14 18 18 C 1.38432 * 119.22491 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.55073 * 179.97438 * 18 17 16 20 20 N 1.31926 * 120.89061 * 0.25995 * 18 17 16 21 21 C 1.31857 * 121.78388 * 359.46549 * 20 18 17 22 22 H 0.96992 * 120.00675 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47228 * 59.99835 * 9 7 2 24 24 H 1.09000 * 109.47341 * 299.99737 * 9 7 2 25 25 H 0.96998 * 119.99871 * 359.97438 * 10 9 7 26 26 H 0.96999 * 119.99937 * 180.02562 * 13 11 10 27 27 H 0.97005 * 119.99369 * 359.97438 * 14 13 11 28 28 H 1.08009 * 120.81290 * 359.95581 * 16 15 14 29 29 H 1.07995 * 120.38919 * 180.02562 * 17 16 15 30 30 H 1.08004 * 119.66260 * 180.26827 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6299 -5.9076 0.0005 14 7 4.0073 -5.6516 0.0000 15 6 4.9157 -6.7139 -0.0011 16 6 6.2875 -6.4707 -0.0022 17 6 7.1482 -7.5553 -0.0027 18 6 6.6220 -8.8357 -0.0016 19 17 7.6933 -10.2017 -0.0029 20 7 5.3174 -9.0318 -0.0052 21 6 4.4639 -8.0267 0.0005 22 1 -0.4851 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5568 0.8903 25 1 3.1569 -3.4352 0.0002 26 1 2.3066 -6.8222 0.0005 27 1 4.3306 -4.7370 -0.0004 28 1 6.6704 -5.4607 -0.0029 29 1 8.2175 -7.4042 -0.0031 30 1 3.4026 -8.2267 0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:47 Heat of formation + Delta-G solvation = 17.704328 kcal Electronic energy + Delta-G solvation = -17220.266948 eV Core-core repulsion = 14077.096228 eV Total energy + Delta-G solvation = -3143.170720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62523 -40.83239 -37.95367 -37.21303 -36.26078 -34.39945 -33.86864 -32.50131 -29.46249 -29.09059 -25.36521 -24.57426 -23.92081 -21.99301 -20.45164 -19.58456 -18.31492 -18.13304 -17.38216 -16.98574 -16.72781 -16.63389 -15.99517 -15.62282 -15.14174 -14.94626 -14.35124 -14.23174 -14.04316 -13.64636 -13.56976 -12.93722 -12.67752 -12.36159 -12.24909 -12.22414 -11.59768 -11.49558 -11.07127 -10.80495 -10.69397 -10.41228 -9.91058 -8.43197 -8.27869 -6.44527 0.02499 0.19776 0.77756 0.99359 1.46170 1.49511 1.57614 2.00618 2.13814 2.43304 2.65526 3.07914 3.43268 3.59441 3.83618 3.99093 4.09788 4.59453 4.81819 4.92259 5.01032 5.17380 5.25591 5.39452 5.42139 5.55396 5.82156 6.14689 6.32465 6.66241 6.74659 7.18158 7.25838 7.46421 8.83972 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.003227 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.219716 B = 8675.953179 C = 9461.027815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.282 3.718 10 N -0.715 5.715 11 C 0.704 3.296 12 O -0.627 6.627 13 N -0.527 5.527 14 N -0.525 5.525 15 C 0.175 3.825 16 C -0.125 4.125 17 C -0.088 4.088 18 C 0.093 3.907 19 Cl -0.043 7.043 20 N -0.461 5.461 21 C 0.030 3.970 22 H 0.269 0.731 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.401 0.599 26 H 0.437 0.563 27 H 0.436 0.564 28 H 0.183 0.817 29 H 0.178 0.822 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.971 -12.786 0.001 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.159 3.841 10 N -0.370 5.370 11 C 0.403 3.597 12 O -0.505 6.505 13 N -0.282 5.282 14 N -0.255 5.255 15 C 0.068 3.932 16 C -0.157 4.157 17 C -0.109 4.109 18 C -0.073 4.073 19 Cl -0.015 7.015 20 N -0.171 5.171 21 C -0.134 4.134 22 H 0.078 0.922 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.238 0.762 26 H 0.283 0.717 27 H 0.281 0.719 28 H 0.200 0.800 29 H 0.195 0.805 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.490 -13.618 -0.004 22.166 hybrid contribution 0.379 1.303 -0.002 1.357 sum 17.868 -12.315 -0.006 21.701 Atomic orbital electron populations 1.70119 1.08271 1.28681 1.49752 1.26027 0.95723 1.03805 0.93876 0.85219 0.77895 0.76652 0.79523 1.18584 1.21479 1.18592 1.21549 0.94418 0.90264 1.53151 0.89477 1.18525 0.88042 0.82994 0.94558 1.45293 1.10913 1.03718 1.77092 1.15919 0.84001 0.81315 0.78509 1.90969 1.14767 1.83495 1.61232 1.44300 0.93779 1.08742 1.81406 1.43279 0.92080 1.07628 1.82494 1.18902 0.90042 0.88190 0.96099 1.21322 0.88826 1.02015 1.03502 1.21888 1.03018 0.89049 0.96994 1.21633 0.89122 0.88798 1.07761 1.98380 1.60898 1.45186 1.97010 1.66731 1.03300 1.36407 1.10708 1.22044 0.99492 0.86115 1.05700 0.92239 0.99067 0.99052 0.76217 0.71675 0.71907 0.79994 0.80496 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.29 21.45 0.28 -53.84 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 40.14 29.54 68.60 2.03 42.16 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.56 -28.33 9.28 25.60 0.24 -28.09 16 8 H 0.09 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.28 14.59 5.43 85.63 0.46 15.05 16 10 N -0.71 -27.72 5.51 -482.29 -2.66 -30.38 16 11 C 0.70 26.62 8.68 179.05 1.55 28.18 16 12 O -0.63 -30.01 17.18 -4.00 -0.07 -30.08 16 13 N -0.53 -13.75 6.23 -184.74 -1.15 -14.90 16 14 N -0.52 -10.06 6.46 -51.10 -0.33 -10.39 16 15 C 0.17 3.03 6.75 38.28 0.26 3.29 16 16 C -0.13 -1.55 10.04 22.58 0.23 -1.33 16 17 C -0.09 -1.17 9.87 22.37 0.22 -0.95 16 18 C 0.09 1.81 7.27 84.72 0.62 2.42 16 19 Cl -0.04 -0.78 29.10 -2.72 -0.08 -0.86 16 20 N -0.46 -10.56 10.33 -186.17 -1.92 -12.48 16 21 C 0.03 0.61 10.65 84.83 0.90 1.51 16 22 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 23 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.40 12.21 6.24 -92.71 -0.58 11.63 16 26 H 0.44 10.00 6.74 -213.32 -1.44 8.57 16 27 H 0.44 7.10 6.73 -213.31 -1.44 5.66 16 28 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.16 2.93 6.22 -2.91 -0.02 2.91 16 Total: -1.00 -70.83 286.61 -1.18 -72.01 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -2.23 Total: 17.89 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 4.94 Total: 20.85 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.78 Total: -121.99 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.07 Total: -30.08 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -70.83 -1.18 -72.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.716 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds