Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35737 * 117.00211 * 2 1 4 4 C 1.39149 * 120.38635 * 359.97374 * 3 2 1 5 5 C 1.38378 * 118.46135 * 179.75713 * 4 3 2 6 6 C 1.39413 * 119.16194 * 0.50480 * 5 4 3 7 7 C 1.47913 * 119.65256 * 179.75638 * 6 5 4 8 8 O 1.21543 * 119.99956 * 359.73025 * 7 6 5 9 9 N 1.34777 * 119.99748 * 179.72726 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72370 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00502 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99575 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47237 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46786 * 120.00449 * 15 13 11 18 18 H 1.48502 * 109.47225 * 239.99913 * 15 13 11 19 19 N 1.32858 * 120.69511 * 359.48070 * 6 5 4 20 20 C 1.31458 * 121.67254 * 0.27879 * 19 6 5 21 21 Cl 1.73592 * 119.60814 * 180.02562 * 20 19 6 22 22 H 1.08994 * 109.47177 * 300.00600 * 1 2 3 23 23 H 1.09005 * 109.46553 * 60.00269 * 1 2 3 24 24 H 1.09000 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.76450 * 0.03977 * 4 3 2 26 26 H 1.07997 * 120.41723 * 180.28790 * 5 4 3 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 29 29 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 30 30 H 0.96997 * 120.00009 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2954 2.3815 -0.0006 5 6 1.9647 3.5926 0.0046 6 6 3.3588 3.5984 -0.0005 7 6 4.0853 4.8868 -0.0006 8 8 3.4669 5.9332 -0.0010 9 7 5.4330 4.9005 0.0000 10 6 6.1525 6.1766 -0.0061 11 6 7.6369 5.9163 -0.0110 12 1 8.0073 4.9018 -0.0093 13 6 8.5221 6.9734 -0.0167 14 7 8.0712 8.2088 -0.0172 15 14 10.3621 6.6507 -0.0220 16 1 10.6078 5.1863 -0.0198 17 1 10.9664 7.2518 -1.2381 18 1 10.9747 7.2578 1.1869 19 7 4.0418 2.4588 0.0000 20 6 3.4369 1.2916 0.0000 21 17 4.3822 -0.1643 0.0015 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 0.2160 2.3467 -0.0003 26 1 1.4141 4.5217 0.0090 27 1 5.9266 4.0655 0.0001 28 1 5.8801 6.7432 -0.8967 29 1 5.8868 6.7479 0.8833 30 1 8.6940 8.9524 -0.0216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -70.182927 kcal Electronic energy + Delta-G solvation = -17506.002406 eV Core-core repulsion = 14326.727858 eV Total energy + Delta-G solvation = -3179.274548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05819 -40.49206 -39.08777 -37.66538 -36.25612 -34.45606 -33.42122 -32.03719 -29.49391 -28.46019 -25.65669 -24.74197 -24.06735 -21.77156 -19.91949 -19.24600 -18.54644 -18.02825 -17.13796 -16.92222 -16.71375 -16.32331 -16.05958 -15.52923 -15.06651 -15.05357 -14.66811 -14.09953 -13.95927 -13.85965 -12.92940 -12.79971 -12.72134 -12.50850 -12.43313 -12.35587 -12.25379 -11.52456 -11.48212 -10.96130 -10.82691 -10.81482 -9.97467 -9.53994 -8.30172 -6.46181 -0.56350 -0.17164 0.66041 1.43058 1.43975 1.57695 1.58110 1.92481 2.23943 2.44297 2.57235 3.04641 3.09031 3.47899 3.59680 3.78152 4.04221 4.35064 4.43331 4.63353 4.68486 4.83413 4.96341 5.07143 5.21163 5.42142 5.60686 5.81859 5.93147 6.28923 6.62206 6.80329 7.17312 7.31904 8.82159 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.004226 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.965320 B = 6623.498863 C = 7584.005870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.304 6.304 3 C 0.129 3.871 4 C -0.143 4.143 5 C -0.059 4.059 6 C 0.040 3.960 7 C 0.555 3.445 8 O -0.582 6.582 9 N -0.689 5.689 10 C 0.264 3.736 11 C -0.559 4.559 12 H 0.077 0.923 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.984 3.016 16 H -0.258 1.258 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.435 5.435 20 C 0.126 3.874 21 Cl -0.014 7.014 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.127 0.873 25 H 0.204 0.796 26 H 0.169 0.831 27 H 0.410 0.590 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 -19.377 0.040 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.214 6.214 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.080 4.080 6 C -0.097 4.097 7 C 0.341 3.659 8 O -0.463 6.463 9 N -0.337 5.337 10 C 0.142 3.858 11 C -0.597 4.597 12 H 0.095 0.905 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.807 3.193 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.201 1.201 19 N -0.149 5.149 20 C -0.044 4.044 21 Cl 0.015 6.985 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.145 0.855 25 H 0.221 0.779 26 H 0.186 0.814 27 H 0.246 0.754 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.176 -18.717 0.043 24.739 hybrid contribution 0.383 0.044 -0.005 0.386 sum -15.793 -18.674 0.039 24.457 Atomic orbital electron populations 1.23679 0.74661 1.06855 1.03510 1.86172 1.24789 1.23919 1.86569 1.19773 0.90616 0.87365 0.94483 1.22073 1.03187 0.88763 1.02821 1.22212 0.92356 1.01087 0.92379 1.20741 0.92645 0.89715 1.06645 1.18249 0.82777 0.87833 0.77064 1.90719 1.68363 1.33665 1.53548 1.46183 1.05711 1.11464 1.70333 1.18703 0.91314 0.80924 0.94867 1.21604 0.90553 0.94299 1.53203 0.90484 1.26003 1.05169 0.94308 0.93704 1.70119 1.37207 0.99435 1.49797 0.85124 0.77255 0.79023 0.77917 1.18185 1.20117 1.20111 1.66762 1.41198 0.97189 1.09758 1.21070 0.87308 0.88876 1.07124 1.98402 1.73320 1.30145 1.96674 0.90339 0.90335 0.85457 0.77907 0.81378 0.75409 0.98462 0.98451 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.83 113.37 1.11 1.15 16 2 O -0.30 -4.76 9.96 -90.61 -0.90 -5.66 16 3 C 0.13 2.61 6.71 22.77 0.15 2.77 16 4 C -0.14 -2.37 9.12 22.52 0.21 -2.16 16 5 C -0.06 -1.47 9.62 22.59 0.22 -1.25 16 6 C 0.04 1.36 6.74 41.84 0.28 1.64 16 7 C 0.56 24.47 7.80 86.81 0.68 25.15 16 8 O -0.58 -28.86 16.31 -3.85 -0.06 -28.92 16 9 N -0.69 -32.79 5.54 -469.63 -2.60 -35.39 16 10 C 0.26 15.10 5.43 85.63 0.46 15.56 16 11 C -0.56 -31.90 9.28 25.60 0.24 -31.66 16 12 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 13 C 0.01 0.46 5.46 84.66 0.46 0.92 16 14 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 15 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 N -0.43 -14.30 9.50 -175.51 -1.67 -15.97 16 20 C 0.13 3.42 7.29 85.03 0.62 4.04 16 21 Cl -0.01 -0.35 28.66 -2.72 -0.08 -0.42 16 22 H 0.08 0.20 7.69 -2.39 -0.02 0.18 16 23 H 0.08 0.20 7.69 -2.38 -0.02 0.19 16 24 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.20 1.32 6.43 -2.91 -0.02 1.30 16 26 H 0.17 3.82 7.63 -2.91 -0.02 3.80 16 27 H 0.41 18.01 7.64 -92.71 -0.71 17.30 16 28 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -73.92 288.81 1.92 -72.00 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.48 Total: 8.62 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 4.43 Total: 16.16 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.98 Total: -107.50 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.97 Total: -34.59 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.42 kcal Total: -73.92 1.92 -72.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.815 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds