Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47112 * 270.00119 * 3 2 1 5 5 H 1.48504 * 109.47271 * 30.00053 * 3 2 1 6 6 H 1.48505 * 109.47288 * 150.00256 * 3 2 1 7 7 C 1.37881 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99799 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00330 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.53770 * 113.19286 * 60.00521 * 13 11 10 15 15 C 1.54855 * 100.62009 * 90.11264 * 14 13 11 16 16 C 1.51133 * 104.38872 * 25.58321 * 15 14 13 17 17 O 1.21279 * 124.73349 * 171.11487 * 16 15 14 18 18 N 1.35822 * 110.52885 * 351.10672 * 16 15 14 19 19 C 1.46725 * 138.91173 * 164.44943 * 18 16 15 20 20 C 1.54404 * 113.64529 * 192.94188 * 19 18 16 21 21 S 1.83562 * 112.74168 * 293.98185 * 13 11 10 22 22 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47179 * 60.00214 * 9 7 2 24 24 H 1.08999 * 109.47558 * 299.99903 * 9 7 2 25 25 H 0.97003 * 119.99758 * 359.97438 * 10 9 7 26 26 H 1.09006 * 111.18005 * 332.27020 * 14 13 11 27 27 H 1.09000 * 111.22708 * 207.97421 * 14 13 11 28 28 H 1.08998 * 110.45268 * 266.85630 * 15 14 13 29 29 H 1.08995 * 110.55876 * 144.36162 * 15 14 13 30 30 H 1.09000 * 108.65276 * 71.84750 * 19 18 16 31 31 H 1.08995 * 108.65671 * 314.04310 * 19 18 16 32 32 H 1.09003 * 110.99878 * 259.68642 * 20 19 18 33 33 H 1.09004 * 110.99596 * 135.85913 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 5.3251 -2.8214 -0.0024 12 8 6.1132 -1.8995 -0.0021 13 6 5.8274 -4.2422 -0.0041 14 6 5.3632 -5.0471 -1.2293 15 6 6.5214 -4.7586 -2.2159 16 6 7.7030 -4.4462 -1.3269 17 8 8.8444 -4.3152 -1.7153 18 7 7.3081 -4.3324 -0.0323 19 6 7.9041 -4.3168 1.3084 20 6 6.8717 -4.4660 2.4468 21 16 5.4150 -5.1425 1.5415 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6799 -0.8911 25 1 3.3697 -3.3125 -0.0021 26 1 4.4155 -4.6691 -1.6129 27 1 5.2963 -6.1107 -1.0005 28 1 6.2812 -3.9016 -2.8451 29 1 6.7282 -5.6348 -2.8302 30 1 8.4371 -3.3754 1.4420 31 1 8.6227 -5.1332 1.3800 32 1 6.6396 -3.4989 2.8928 33 1 7.2226 -5.1687 3.2026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787622105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -73.697932 kcal Electronic energy + Delta-G solvation = -18964.352377 eV Core-core repulsion = 15922.802208 eV Total energy + Delta-G solvation = -3041.550169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08292 -40.13455 -37.85176 -36.30290 -35.12870 -34.38687 -30.93379 -30.50976 -28.66582 -25.43354 -24.48327 -23.28902 -21.89449 -20.70721 -19.67780 -18.65625 -18.28108 -17.31950 -16.88467 -16.74465 -16.54592 -16.11088 -15.71329 -15.37225 -15.04236 -14.68598 -14.57998 -14.40909 -14.27112 -13.90229 -13.66119 -13.10660 -12.97910 -12.73604 -12.49086 -12.28611 -11.96324 -11.83044 -11.66024 -11.30571 -11.11862 -10.92042 -10.08512 -9.97560 -9.02567 -8.39110 -6.46001 0.11434 0.76285 1.17259 1.32068 1.35610 1.45680 1.47843 1.65810 2.18861 2.27733 2.84947 2.96322 3.13428 3.47466 3.54867 3.78610 3.79934 4.17480 4.33665 4.44618 4.56246 4.64384 4.71186 4.76205 4.84668 4.95853 4.98409 5.22600 5.36125 5.81134 6.05533 6.52633 6.65645 6.80240 7.06494 7.23609 8.75339 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.005677 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.000030 B = 4931.228483 C = 5161.345188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.682 5.682 11 C 0.512 3.488 12 O -0.576 6.576 13 C 0.141 3.859 14 C -0.099 4.099 15 C -0.137 4.137 16 C 0.539 3.461 17 O -0.561 6.561 18 N -0.610 5.610 19 C 0.115 3.885 20 C -0.073 4.073 21 S -0.218 6.218 22 H 0.272 0.728 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.411 0.589 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.151 0.849 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.465 -13.687 1.658 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.755 3.245 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.111 3.889 10 N -0.332 5.332 11 C 0.293 3.707 12 O -0.457 6.457 13 C -0.060 4.060 14 C -0.138 4.138 15 C -0.178 4.178 16 C 0.330 3.670 17 O -0.439 6.439 18 N -0.347 5.347 19 C -0.006 4.006 20 C -0.221 4.221 21 S 0.011 5.989 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.248 0.752 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.130 0.870 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.709 -13.642 1.857 18.073 hybrid contribution 0.643 1.792 -0.044 1.904 sum 12.352 -11.850 1.813 17.213 Atomic orbital electron populations 1.69963 1.07582 1.28564 1.50536 1.25509 0.95444 1.02339 0.93685 0.85957 0.79281 0.79822 0.79422 1.19042 1.19942 1.18621 1.21222 0.89580 0.94712 1.52632 0.91763 1.19170 0.93667 0.80120 0.95955 1.45823 1.05661 1.10252 1.71451 1.20556 0.83057 0.90214 0.76832 1.90689 1.56400 1.46569 1.52039 1.24221 0.86360 0.93987 1.01399 1.22770 0.99709 1.02215 0.89093 1.22524 0.90626 1.06888 0.97728 1.21801 0.90334 0.73690 0.81223 1.90682 1.23897 1.51881 1.77397 1.49774 1.05085 1.73189 1.06608 1.21677 0.95872 1.04172 0.78926 1.24834 0.91834 1.06148 0.99250 1.88350 1.40483 1.59715 1.10365 0.91839 0.96820 0.96614 0.75242 0.86737 0.84729 0.86994 0.83088 0.91492 0.87383 0.88451 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 13.96 21.45 0.30 -53.50 16 2 C 0.03 1.70 5.47 84.66 0.46 2.16 16 3 Si 0.93 42.79 27.47 68.60 1.88 44.68 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 7 C -0.54 -28.64 9.83 25.60 0.25 -28.39 16 8 H 0.06 3.54 7.84 -2.91 -0.02 3.52 16 9 C 0.23 10.93 4.50 85.63 0.38 11.31 16 10 N -0.68 -25.64 5.37 -466.80 -2.51 -28.15 16 11 C 0.51 18.31 6.85 87.66 0.60 18.91 16 12 O -0.58 -25.49 16.64 -3.02 -0.05 -25.54 16 13 C 0.14 3.68 0.69 44.14 0.03 3.71 16 14 C -0.10 -1.82 6.33 31.49 0.20 -1.62 16 15 C -0.14 -2.68 6.80 30.62 0.21 -2.47 16 16 C 0.54 15.65 8.37 87.63 0.73 16.38 16 17 O -0.56 -20.44 18.03 -3.03 -0.05 -20.49 16 18 N -0.61 -16.58 2.93 -776.87 -2.28 -18.86 16 19 C 0.12 2.54 7.25 86.81 0.63 3.17 16 20 C -0.07 -1.31 7.56 72.46 0.55 -0.76 16 21 S -0.22 -4.84 22.28 -56.49 -1.26 -6.10 16 22 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 23 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 24 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 25 H 0.41 13.59 8.16 -92.71 -0.76 12.83 16 26 H 0.11 1.95 7.71 -2.38 -0.02 1.94 16 27 H 0.13 1.77 7.87 -2.39 -0.02 1.75 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.24 294.57 0.41 -72.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.33 Total: 12.72 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 4.05 Total: 22.40 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.48 Total: -100.50 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.10 Total: -46.03 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.68 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -1.26 Total: -6.10 kcal Total: -73.24 0.41 -72.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787622105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.870 kcal (2) G-P(sol) polarization free energy of solvation -73.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds