Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36052 * 117.00669 * 2 1 4 4 C 1.38525 * 119.95760 * 359.97438 * 3 2 1 5 5 C 1.38436 * 120.39526 * 180.02562 * 4 3 2 6 6 C 1.38075 * 120.31812 * 359.72552 * 5 4 3 7 7 F 1.35105 * 120.03700 * 180.26990 * 6 5 4 8 8 C 1.40070 * 119.92277 * 0.55340 * 6 5 4 9 9 C 1.47214 * 120.19540 * 179.72510 * 8 6 5 10 10 O 1.21563 * 119.99760 * 269.72215 * 9 8 6 11 11 O 1.34790 * 120.00103 * 89.44369 * 9 8 6 12 12 C 1.34878 * 116.99954 * 180.27278 * 11 9 8 13 13 H 1.08003 * 119.99846 * 0.02562 * 12 11 9 14 14 C 1.38777 * 120.00105 * 179.97438 * 12 11 9 15 15 N 1.31431 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46899 * 60.00106 * 16 14 12 18 18 H 1.48494 * 109.47389 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46923 * 300.00653 * 16 14 12 20 20 C 1.38996 * 119.96788 * 179.97438 * 3 2 1 21 21 O 1.35748 * 120.16215 * 359.96194 * 20 3 2 22 22 C 1.42905 * 116.99712 * 270.02202 * 21 20 3 23 23 H 1.09000 * 109.47334 * 59.99392 * 1 2 3 24 24 H 1.08996 * 109.47806 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47128 * 299.99668 * 1 2 3 26 26 H 1.08004 * 119.80886 * 0.04578 * 4 3 2 27 27 H 1.07999 * 119.83724 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00116 * 179.97438 * 15 14 12 29 29 H 1.08995 * 109.47115 * 59.99793 * 22 21 20 30 30 H 1.09001 * 109.46720 * 179.97438 * 22 21 20 31 31 H 1.09000 * 109.46497 * 299.99513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2916 2.3735 -0.0005 5 6 1.9107 3.6116 -0.0011 6 6 3.2885 3.7019 0.0046 7 9 3.8869 4.9132 0.0096 8 6 4.0652 2.5363 -0.0007 9 6 5.5346 2.6256 -0.0008 10 8 6.1412 2.6620 -1.0536 11 8 6.2070 2.6726 1.1664 12 6 7.5511 2.7597 1.0957 13 1 8.0404 2.7891 0.1334 14 6 8.3052 2.8126 2.2595 15 7 7.7097 2.7774 3.4307 16 14 10.1667 2.9339 2.1616 17 1 10.5445 4.1715 1.4328 18 1 10.7330 2.9746 3.5338 19 1 10.7025 1.7516 1.4403 20 6 3.4348 1.2840 0.0005 21 8 4.1766 0.1471 0.0018 22 6 4.5301 -0.3954 1.2758 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 0.2132 2.3127 -0.0002 27 1 1.3132 4.5112 -0.0019 28 1 8.2369 2.8140 4.2441 29 1 3.6244 -0.6360 1.8322 30 1 5.1204 -1.3007 1.1340 31 1 5.1151 0.3367 1.8326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788182574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -160.831766 kcal Electronic energy + Delta-G solvation = -20912.279017 eV Core-core repulsion = 17268.444514 eV Total energy + Delta-G solvation = -3643.834503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.58401 -40.47650 -38.95121 -37.84511 -36.55528 -35.11338 -32.18623 -30.82638 -29.77173 -27.38456 -26.64292 -25.55271 -23.49050 -22.27937 -20.50810 -18.35467 -17.78291 -17.64885 -17.33283 -16.51264 -16.07553 -15.73913 -15.21077 -14.89266 -14.84197 -14.64140 -14.37414 -14.30703 -13.99785 -13.04646 -12.90403 -12.55557 -12.27248 -12.07670 -11.69859 -11.62479 -11.19605 -11.05298 -10.87840 -10.47241 -10.42885 -9.94133 -9.79920 -9.22397 -8.79905 -8.60079 -8.01460 -6.44246 -4.11383 0.94428 1.17930 2.94550 3.14860 3.18917 3.22420 3.30192 3.44391 3.87542 3.93345 4.35989 4.47598 4.74455 4.85175 4.99905 5.04965 5.09461 5.30068 5.37363 5.41656 5.66231 5.82338 5.96654 5.97673 6.12487 6.20805 6.46961 6.73621 7.10209 7.36135 7.71663 7.89784 8.60112 9.03544 9.75887 10.73043 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.006071 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.659208 B = 4611.316081 C = 5195.146454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.096 3.904 4 C -0.164 4.164 5 C -0.123 4.123 6 C 0.112 3.888 7 F -0.125 7.125 8 C -0.088 4.088 9 C 0.447 3.553 10 O -0.530 6.530 11 O -0.201 6.201 12 C -0.382 4.382 13 H 0.097 0.903 14 C 0.045 3.955 15 N -0.862 5.862 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.268 1.268 20 C 0.130 3.870 21 O -0.319 6.319 22 C 0.033 3.967 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.271 0.729 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 -3.482 -2.255 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.050 3.950 4 C -0.182 4.182 5 C -0.142 4.142 6 C 0.092 3.908 7 F -0.103 7.103 8 C -0.091 4.091 9 C 0.292 3.708 10 O -0.426 6.426 11 O -0.107 6.107 12 C -0.458 4.458 13 H 0.115 0.885 14 C -0.160 4.160 15 N -0.499 5.499 16 Si 0.770 3.230 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.193 1.193 20 C 0.085 3.915 21 O -0.235 6.235 22 C -0.060 4.060 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.523 -3.729 -2.414 15.187 hybrid contribution 0.645 0.508 0.189 0.842 sum -13.878 -3.221 -2.225 14.420 Atomic orbital electron populations 1.23107 0.78595 1.04069 1.01327 1.86197 1.21021 1.25594 1.88753 1.19129 0.90902 0.85238 0.99732 1.20967 1.00265 0.90747 1.06263 1.20789 0.91914 0.98887 1.02613 1.17330 0.90271 0.79609 1.03582 1.91551 1.84077 1.41011 1.93666 1.19541 0.93297 0.92119 1.04147 1.20066 0.86528 0.79992 0.84230 1.90693 1.68753 1.50147 1.33021 1.84004 1.22284 1.74656 1.29785 1.21246 0.77273 1.52127 0.95118 0.88505 1.25350 1.00690 0.95996 0.93941 1.69983 1.36572 1.45890 0.97427 0.85712 0.80156 0.79514 0.77637 1.19345 1.20307 1.19339 1.17525 0.86263 0.85620 1.02134 1.86008 1.70254 1.37113 1.30136 1.23148 0.99734 0.99573 0.83589 0.92545 0.88136 0.92567 0.83810 0.83608 0.91901 0.93616 0.88701 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -4.19 10.28 -34.56 -0.36 -4.54 16 3 C 0.10 1.51 6.69 -39.19 -0.26 1.24 16 4 C -0.16 -2.07 9.03 -39.40 -0.36 -2.42 16 5 C -0.12 -1.73 10.00 -39.57 -0.40 -2.12 16 6 C 0.11 2.15 7.29 -38.95 -0.28 1.87 16 7 F -0.12 -2.58 16.83 2.25 0.04 -2.54 16 8 C -0.09 -1.97 5.77 -104.83 -0.60 -2.58 16 9 C 0.45 12.22 6.50 34.38 0.22 12.45 16 10 O -0.53 -15.70 16.36 -19.32 -0.32 -16.02 16 11 O -0.20 -5.99 9.51 -21.87 -0.21 -6.20 16 12 C -0.38 -11.53 9.65 30.93 0.30 -11.23 16 13 H 0.10 2.95 6.86 -52.48 -0.36 2.59 16 14 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 15 N -0.86 -25.17 13.67 55.48 0.76 -24.42 16 16 Si 0.95 21.43 29.55 -169.99 -5.02 16.41 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 C 0.13 2.60 5.75 -38.57 -0.22 2.37 16 21 O -0.32 -6.64 9.65 -33.61 -0.32 -6.96 16 22 C 0.03 0.60 11.13 101.05 1.12 1.73 16 23 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 26 H 0.14 1.21 6.26 -52.48 -0.33 0.88 16 27 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.07 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -35.60 291.41 -3.34 -38.94 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.72 Total: -2.73 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.42 Total: 3.66 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.76 Total: -24.42 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.20 Total: -33.72 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.60 -3.34 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788182574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.888 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds