Wall clock time and date at job start Mon Mar 30 2020 01:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36052 * 117.00669 * 2 1 4 4 C 1.38525 * 119.95760 * 359.97438 * 3 2 1 5 5 C 1.38436 * 120.39526 * 180.02562 * 4 3 2 6 6 C 1.38075 * 120.31812 * 359.72552 * 5 4 3 7 7 F 1.35105 * 120.03700 * 180.26990 * 6 5 4 8 8 C 1.40070 * 119.92277 * 0.55340 * 6 5 4 9 9 C 1.47214 * 120.19540 * 179.72510 * 8 6 5 10 10 O 1.21563 * 119.99760 * 269.72215 * 9 8 6 11 11 O 1.34790 * 120.00103 * 89.44369 * 9 8 6 12 12 C 1.34878 * 116.99954 * 180.27278 * 11 9 8 13 13 H 1.08003 * 119.99846 * 0.02562 * 12 11 9 14 14 C 1.38777 * 120.00105 * 179.97438 * 12 11 9 15 15 N 1.31431 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46899 * 60.00106 * 16 14 12 18 18 H 1.48494 * 109.47389 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46923 * 300.00653 * 16 14 12 20 20 C 1.38996 * 119.96788 * 179.97438 * 3 2 1 21 21 O 1.35748 * 120.16215 * 359.96194 * 20 3 2 22 22 C 1.42905 * 116.99712 * 270.02202 * 21 20 3 23 23 H 1.09000 * 109.47334 * 59.99392 * 1 2 3 24 24 H 1.08996 * 109.47806 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47128 * 299.99668 * 1 2 3 26 26 H 1.08004 * 119.80886 * 0.04578 * 4 3 2 27 27 H 1.07999 * 119.83724 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00116 * 179.97438 * 15 14 12 29 29 H 1.08995 * 109.47115 * 59.99793 * 22 21 20 30 30 H 1.09001 * 109.46720 * 179.97438 * 22 21 20 31 31 H 1.09000 * 109.46497 * 299.99513 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2916 2.3735 -0.0005 5 6 1.9107 3.6116 -0.0011 6 6 3.2885 3.7019 0.0046 7 9 3.8869 4.9132 0.0096 8 6 4.0652 2.5363 -0.0007 9 6 5.5346 2.6256 -0.0008 10 8 6.1412 2.6620 -1.0536 11 8 6.2070 2.6726 1.1664 12 6 7.5511 2.7597 1.0957 13 1 8.0404 2.7891 0.1334 14 6 8.3052 2.8126 2.2595 15 7 7.7097 2.7774 3.4307 16 14 10.1667 2.9339 2.1616 17 1 10.5445 4.1715 1.4328 18 1 10.7330 2.9746 3.5338 19 1 10.7025 1.7516 1.4403 20 6 3.4348 1.2840 0.0005 21 8 4.1766 0.1471 0.0018 22 6 4.5301 -0.3954 1.2758 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 0.2132 2.3127 -0.0002 27 1 1.3132 4.5112 -0.0019 28 1 8.2369 2.8140 4.2441 29 1 3.6244 -0.6360 1.8322 30 1 5.1204 -1.3007 1.1340 31 1 5.1151 0.3367 1.8326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788182574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:37 Heat of formation + Delta-G solvation = -186.210876 kcal Electronic energy + Delta-G solvation = -20913.379538 eV Core-core repulsion = 17268.444514 eV Total energy + Delta-G solvation = -3644.935024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.09364 -41.86584 -40.85580 -39.23423 -37.91795 -37.26829 -34.41056 -32.26830 -30.98297 -28.27799 -28.16979 -27.54404 -25.10309 -23.61006 -22.22266 -20.05932 -19.80887 -19.06490 -18.72254 -18.24485 -17.40311 -17.07990 -16.80505 -16.57224 -16.29782 -16.23704 -16.10042 -15.69225 -15.67078 -14.76595 -14.14070 -13.94438 -13.74392 -13.42479 -13.31182 -13.19227 -12.79260 -12.47575 -12.30039 -12.17913 -12.13453 -11.89488 -11.49878 -11.16151 -10.77704 -10.21815 -9.26044 -8.62514 -6.43647 -0.41205 -0.11440 1.07224 1.30206 1.46718 1.49007 1.92604 2.03676 2.18148 2.48770 2.65818 2.88608 3.11537 3.64155 3.80418 4.00764 4.07348 4.28332 4.37321 4.42851 4.50321 4.53937 4.67166 4.74513 4.78706 4.88283 4.91722 5.05451 5.34768 5.70685 5.99354 6.39436 6.39982 6.79888 7.54985 8.57366 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.006071 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.659208 B = 4611.316081 C = 5195.146454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.320 6.320 3 C 0.110 3.890 4 C -0.133 4.133 5 C -0.093 4.093 6 C 0.081 3.919 7 F -0.144 7.144 8 C -0.135 4.135 9 C 0.448 3.552 10 O -0.569 6.569 11 O -0.224 6.224 12 C -0.429 4.429 13 H 0.080 0.920 14 C 0.003 3.997 15 N -0.895 5.895 16 Si 1.021 2.979 17 H -0.262 1.262 18 H -0.253 1.253 19 H -0.260 1.260 20 C 0.099 3.901 21 O -0.343 6.343 22 C 0.037 3.963 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.205 0.795 27 H 0.195 0.805 28 H 0.283 0.717 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.803 -3.682 -1.885 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.233 6.233 3 C 0.064 3.936 4 C -0.151 4.151 5 C -0.111 4.111 6 C 0.062 3.938 7 F -0.123 7.123 8 C -0.138 4.138 9 C 0.295 3.705 10 O -0.467 6.467 11 O -0.132 6.132 12 C -0.504 4.504 13 H 0.098 0.902 14 C -0.198 4.198 15 N -0.531 5.531 16 Si 0.838 3.162 17 H -0.186 1.186 18 H -0.176 1.176 19 H -0.184 1.184 20 C 0.053 3.947 21 O -0.260 6.260 22 C -0.056 4.056 23 H 0.097 0.903 24 H 0.138 0.862 25 H 0.097 0.903 26 H 0.222 0.778 27 H 0.212 0.788 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.437 -3.939 -2.033 17.992 hybrid contribution 1.286 0.483 0.066 1.375 sum -16.151 -3.456 -1.966 16.633 Atomic orbital electron populations 1.23603 0.75157 1.06351 1.03422 1.86198 1.24417 1.24631 1.88090 1.19074 0.89307 0.87259 0.97998 1.21632 1.02750 0.88599 1.02094 1.21328 0.89333 1.01490 0.98936 1.17798 0.92205 0.77953 1.05871 1.91492 1.84836 1.41848 1.94096 1.19523 0.90173 0.94951 1.09134 1.21072 0.88880 0.77531 0.83013 1.90616 1.70546 1.51621 1.33953 1.84029 1.22417 1.75386 1.31333 1.21480 0.78005 1.55403 0.95486 0.90186 1.26610 1.06279 0.94098 0.92809 1.70059 1.39176 1.45490 0.98356 0.84668 0.72614 0.79902 0.79010 1.18604 1.17645 1.18395 1.17786 0.88260 0.84247 1.04375 1.85958 1.71111 1.37698 1.31223 1.23164 1.00679 0.98760 0.83003 0.90338 0.86155 0.90290 0.77820 0.78766 0.90759 0.90821 0.86847 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -7.77 10.28 -80.12 -0.82 -8.60 16 3 C 0.11 3.19 6.69 22.52 0.15 3.34 16 4 C -0.13 -2.67 9.03 22.39 0.20 -2.47 16 5 C -0.09 -2.25 10.00 22.28 0.22 -2.02 16 6 C 0.08 3.15 7.29 22.68 0.17 3.32 16 7 F -0.14 -6.18 16.83 44.97 0.76 -5.43 16 8 C -0.14 -6.35 5.77 -20.00 -0.12 -6.47 16 9 C 0.45 26.49 6.50 70.18 0.46 26.95 16 10 O -0.57 -36.54 16.36 19.63 0.32 -36.22 16 11 O -0.22 -14.48 9.51 10.51 0.10 -14.38 16 12 C -0.43 -27.65 9.65 67.95 0.66 -27.00 16 13 H 0.08 5.26 6.86 -2.91 -0.02 5.24 16 14 C 0.00 0.20 5.49 84.88 0.47 0.67 16 15 N -0.89 -53.83 13.67 21.63 0.30 -53.54 16 16 Si 1.02 44.60 29.55 68.60 2.03 46.62 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.10 4.01 5.75 22.93 0.13 4.15 16 21 O -0.34 -14.95 9.65 -76.71 -0.74 -15.69 16 22 C 0.04 1.42 11.13 113.37 1.26 2.68 16 23 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 24 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.55 7.66 -2.38 -0.02 0.53 16 26 H 0.21 1.71 6.26 -2.91 -0.02 1.69 16 27 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.02 1.12 7.90 -2.39 -0.02 1.10 16 Total: -1.00 -87.28 291.41 7.82 -79.46 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.18 Total: 3.42 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.71 Total: 4.34 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.30 Total: -53.54 kcal Atomic # 8 Polarization: -73.74 SS G_CDS: -1.14 Total: -74.88 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.76 Total: -5.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -87.28 7.82 -79.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788182574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.750 kcal (2) G-P(sol) polarization free energy of solvation -87.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds