Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35918 * 116.99811 * 2 1 4 4 C 1.38599 * 120.02313 * 359.72403 * 3 2 1 5 5 C 1.38805 * 119.88201 * 179.72155 * 4 3 2 6 6 N 1.39728 * 120.03364 * 180.27087 * 5 4 3 7 7 N 1.40105 * 120.00169 * 180.27978 * 6 5 4 8 8 C 1.34772 * 120.00087 * 180.02562 * 7 6 5 9 9 O 1.21686 * 120.00330 * 359.97438 * 8 7 6 10 10 C 1.46378 * 119.99588 * 180.02562 * 8 7 6 11 11 H 1.07997 * 120.00157 * 353.92964 * 10 8 7 12 12 C 1.40049 * 119.99917 * 173.93955 * 10 8 7 13 13 N 1.30675 * 119.99698 * 6.13829 * 12 10 8 14 14 Si 1.86798 * 120.00277 * 186.14737 * 12 10 8 15 15 H 1.48495 * 109.47171 * 94.97610 * 14 12 10 16 16 H 1.48495 * 109.47170 * 214.98104 * 14 12 10 17 17 H 1.48501 * 109.46759 * 334.97949 * 14 12 10 18 18 C 1.38951 * 119.92730 * 0.55505 * 5 4 3 19 19 C 1.38135 * 120.04355 * 359.72166 * 18 5 4 20 20 C 1.38284 * 120.11567 * 359.97438 * 19 18 5 21 21 Cl 1.73608 * 119.96551 * 179.97438 * 20 19 18 22 22 H 1.09008 * 109.46985 * 60.00001 * 1 2 3 23 23 H 1.09000 * 109.47306 * 300.00574 * 1 2 3 24 24 H 1.08994 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.05960 * 359.97438 * 4 3 2 26 26 H 0.96999 * 120.00277 * 0.28126 * 6 5 4 27 27 H 0.96999 * 119.99554 * 0.02562 * 7 6 5 28 28 H 0.97007 * 119.99558 * 180.02562 * 13 12 10 29 29 H 1.07996 * 119.97207 * 179.70398 * 18 5 4 30 30 H 1.07997 * 119.94299 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3737 -0.0058 5 6 1.9248 3.6090 0.0001 6 7 1.1673 4.7831 0.0000 7 7 1.8071 6.0295 0.0000 8 6 1.0764 7.1620 0.0004 9 8 -0.1390 7.1020 0.0004 10 6 1.7449 8.4642 -0.0001 11 1 2.8190 8.5199 0.0980 12 6 0.9917 9.6380 -0.1277 13 7 -0.3138 9.5800 -0.1256 14 14 1.8531 11.2864 -0.3012 15 1 1.9777 11.6307 -1.7403 16 1 1.0611 12.3341 0.3917 17 1 3.2053 11.2046 0.3071 18 6 3.3126 3.6766 0.0001 19 6 4.0616 2.5159 0.0000 20 6 3.4327 1.2843 0.0005 21 17 4.3778 -0.1719 -0.0002 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2131 2.3187 -0.0107 26 1 0.1985 4.7353 0.0000 27 1 2.7759 6.0773 -0.0003 28 1 -0.8355 10.3929 -0.2143 29 1 3.8060 4.6373 -0.0002 30 1 5.1402 2.5704 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790172184.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = -43.099561 kcal Electronic energy + Delta-G solvation = -17539.415549 eV Core-core repulsion = 14361.315424 eV Total energy + Delta-G solvation = -3178.100125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24212 -39.83869 -38.55559 -37.35677 -36.02178 -34.65809 -32.76219 -31.09554 -29.71458 -28.15687 -27.62693 -23.73645 -23.20884 -21.96449 -20.17690 -18.93700 -18.22540 -17.46927 -17.31700 -17.01604 -16.74190 -16.32222 -15.51863 -15.29374 -14.93321 -14.66257 -14.60195 -14.26557 -13.40781 -13.28877 -13.18138 -12.81655 -12.73794 -12.66927 -12.33660 -12.28691 -12.01468 -11.66154 -11.51513 -10.96848 -10.12327 -10.01708 -9.37091 -8.40402 -8.10043 -6.92314 0.33401 0.42232 1.28851 1.40349 1.42887 1.48708 1.61987 2.26789 2.31003 2.37379 2.70071 3.51032 3.64332 3.83619 4.08840 4.14963 4.39848 4.42262 4.49626 4.64332 4.74982 5.01389 5.20418 5.24969 5.27550 5.46985 5.58631 5.98066 6.24540 6.43104 6.76041 6.86663 7.31512 8.34879 8.55950 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.036721 B = 0.003748 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.316330 B = 7468.041610 C = 8211.283139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.186 3.814 4 C -0.286 4.286 5 C 0.256 3.744 6 N -0.535 5.535 7 N -0.553 5.553 8 C 0.540 3.460 9 O -0.627 6.627 10 C -0.560 4.560 11 H 0.098 0.902 12 C 0.032 3.968 13 N -0.817 5.817 14 Si 1.004 2.996 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.245 1.245 18 C -0.237 4.237 19 C -0.011 4.011 20 C -0.149 4.149 21 Cl -0.070 7.070 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.125 0.875 25 H 0.146 0.854 26 H 0.423 0.577 27 H 0.418 0.582 28 H 0.278 0.722 29 H 0.135 0.865 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -14.081 -0.125 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.229 6.229 3 C 0.138 3.862 4 C -0.312 4.312 5 C 0.146 3.854 6 N -0.252 5.252 7 N -0.304 5.304 8 C 0.345 3.655 9 O -0.513 6.513 10 C -0.597 4.597 11 H 0.116 0.884 12 C -0.184 4.184 13 N -0.445 5.445 14 Si 0.823 3.177 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.168 1.168 18 C -0.261 4.261 19 C -0.030 4.030 20 C -0.179 4.179 21 Cl -0.042 7.042 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.164 0.836 26 H 0.263 0.737 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.515 -14.149 -0.125 15.577 hybrid contribution -0.295 0.672 -0.061 0.737 sum 6.220 -13.476 -0.186 14.843 Atomic orbital electron populations 1.23380 0.76379 1.05736 1.02231 1.86130 1.23399 1.25518 1.87870 1.18321 0.90380 0.84430 0.93061 1.20395 1.00732 0.89418 1.20630 1.17828 0.91592 0.84245 0.91695 1.43558 1.07059 0.95050 1.79552 1.45303 1.08082 0.94717 1.82315 1.18914 0.86660 0.83061 0.76846 1.90574 1.15838 1.86953 1.57903 1.21249 0.95841 0.88368 1.54264 0.88363 1.26980 0.95154 1.05135 0.91150 1.70168 1.08068 1.31071 1.35235 0.84903 0.79130 0.74430 0.79270 1.18807 1.19867 1.16776 1.20501 0.91115 0.99542 1.14957 1.20759 1.01027 0.88298 0.92912 1.19934 0.88503 0.88688 1.20739 1.98310 1.71749 1.36429 1.97707 0.91945 0.91935 0.85708 0.83643 0.73683 0.74009 0.91210 0.84689 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.32 -7.77 9.95 -92.63 -0.92 -8.69 16 3 C 0.19 5.08 6.68 22.50 0.15 5.23 16 4 C -0.29 -8.08 8.88 22.49 0.20 -7.88 16 5 C 0.26 8.17 6.72 38.19 0.26 8.42 16 6 N -0.53 -20.63 6.45 -51.38 -0.33 -20.96 16 7 N -0.55 -23.91 6.21 -176.63 -1.10 -25.01 16 8 C 0.54 29.55 7.86 86.36 0.68 30.23 16 9 O -0.63 -39.63 14.88 -4.30 -0.06 -39.70 16 10 C -0.56 -29.56 9.54 24.83 0.24 -29.33 16 11 H 0.10 4.54 7.85 -2.91 -0.02 4.52 16 12 C 0.03 1.68 5.49 85.30 0.47 2.15 16 13 N -0.82 -47.42 11.85 21.84 0.26 -47.17 16 14 Si 1.00 38.26 29.56 68.60 2.03 40.29 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 17 H -0.24 -8.55 7.11 99.48 0.71 -7.84 16 18 C -0.24 -6.71 9.48 22.42 0.21 -6.50 16 19 C -0.01 -0.26 9.82 22.26 0.22 -0.04 16 20 C -0.15 -3.96 6.33 22.43 0.14 -3.82 16 21 Cl -0.07 -1.72 28.49 -2.72 -0.08 -1.79 16 22 H 0.06 1.00 7.65 -2.38 -0.02 0.98 16 23 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.15 3.63 6.30 -2.91 -0.02 3.61 16 26 H 0.42 17.09 8.01 -213.32 -1.71 15.38 16 27 H 0.42 15.37 6.58 -213.32 -1.40 13.96 16 28 H 0.28 14.58 8.29 -92.70 -0.77 13.81 16 29 H 0.14 3.55 6.20 -2.91 -0.02 3.54 16 30 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -69.79 284.08 1.57 -68.22 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -1.90 Total: 34.95 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.68 Total: -0.13 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.17 Total: -93.13 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.99 Total: -48.39 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.79 kcal Total: -69.79 1.57 -68.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790172184.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.119 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds