Wall clock time and date at job start Mon Mar 30 2020 01:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47191 * 2 1 4 4 C 1.46499 * 120.00063 * 270.27230 * 3 2 1 5 5 C 1.50699 * 109.47359 * 269.72514 * 4 3 2 6 6 H 1.08000 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00191 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47353 * 120.00333 * 9 7 5 12 12 H 1.48500 * 109.46931 * 239.99922 * 9 7 5 13 13 C 1.34773 * 120.00566 * 90.00124 * 3 2 1 14 14 S 1.71194 * 120.00664 * 180.02562 * 13 3 2 15 15 N 1.34787 * 119.99580 * 359.97438 * 13 3 2 16 16 C 1.40763 * 119.99746 * 175.57969 * 15 13 3 17 17 C 1.38792 * 122.61904 * 221.95037 * 16 15 13 18 18 C 1.33372 * 114.89367 * 179.80567 * 17 16 15 19 19 S 1.75862 * 109.70185 * 0.44454 * 18 17 16 20 20 C 1.33794 * 122.62053 * 42.24876 * 16 15 13 21 21 H 1.08996 * 109.47640 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47245 * 300.00449 * 1 2 3 23 23 H 1.09005 * 109.47200 * 59.99937 * 1 2 3 24 24 H 1.09000 * 109.47319 * 240.00102 * 2 1 3 25 25 H 1.08998 * 109.47426 * 119.99790 * 2 1 3 26 26 H 1.09002 * 109.47057 * 29.72681 * 4 3 2 27 27 H 1.08996 * 109.47409 * 149.72607 * 4 3 2 28 28 H 0.96994 * 120.00250 * 179.97438 * 8 7 5 29 29 H 0.96993 * 119.99814 * 355.57601 * 15 13 3 30 30 H 1.08005 * 122.55326 * 0.02562 * 17 16 15 31 31 H 1.07999 * 125.15240 * 180.21121 * 18 17 16 32 32 H 1.07999 * 125.20315 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2568 2.0738 -1.2687 5 6 3.6800 1.8433 -1.7071 6 1 4.3409 1.2414 -1.1011 7 6 4.1384 2.4008 -2.8819 8 7 3.3334 3.1333 -3.6202 9 14 5.9024 2.1144 -3.4257 10 1 6.5959 1.2615 -2.4273 11 1 5.9094 1.4363 -4.7468 12 1 6.6046 3.4184 -3.5350 13 6 2.2430 2.0166 1.1671 14 16 2.8130 3.6309 1.1671 15 7 2.0178 1.3814 2.3344 16 6 2.3400 2.0107 3.5516 17 6 2.9458 1.3386 4.6040 18 6 3.1854 2.0848 5.6831 19 16 2.6216 3.7273 5.4052 20 6 2.0810 3.3021 3.7866 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.5758 1.6875 -2.0271 27 1 2.0857 3.1422 -1.1372 28 1 3.6560 3.5258 -4.4465 29 1 1.6338 0.4908 2.3356 30 1 3.2067 0.2918 4.5517 31 1 3.6513 1.7328 6.5917 32 1 1.6116 3.9799 3.0890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790308187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:01 Heat of formation + Delta-G solvation = 64.256028 kcal Electronic energy + Delta-G solvation = -16244.431067 eV Core-core repulsion = 13651.615901 eV Total energy + Delta-G solvation = -2592.815166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67067 -37.66361 -34.19064 -32.75817 -31.02290 -28.88395 -27.29879 -24.91642 -23.69313 -22.70510 -20.63187 -19.65319 -18.12951 -17.32935 -16.59275 -16.32682 -15.20489 -14.79828 -14.32808 -14.10584 -13.77359 -13.27606 -13.16715 -12.68648 -12.38849 -12.24826 -12.11271 -11.68997 -11.42755 -11.08358 -10.92905 -10.78442 -10.72689 -10.31703 -10.16732 -9.85015 -8.94214 -8.57300 -8.46054 -7.77394 -7.01236 -6.22113 -6.08043 -4.11650 1.22076 1.80037 1.97220 2.13622 2.62734 2.95491 3.29729 3.38488 3.39717 3.45429 3.75941 4.43299 4.88003 5.10271 5.17132 5.28306 5.33779 5.35475 5.63356 5.80691 5.87005 5.98299 6.10389 6.15612 6.37260 6.58449 6.85708 7.13566 7.43404 7.51903 7.86977 7.91224 8.10928 8.87054 9.51448 11.00698 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.005695 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.252778 B = 4915.283737 C = 5506.846886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 N -0.533 5.533 4 C 0.237 3.763 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.554 3.446 14 S -0.631 6.631 15 N -0.637 5.637 16 C 0.092 3.908 17 C -0.130 4.130 18 C -0.223 4.223 19 S 0.100 5.900 20 C -0.148 4.148 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.264 0.736 29 H 0.399 0.601 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -7.335 14.897 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 N -0.236 5.236 4 C 0.119 3.881 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.529 5.529 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.207 1.207 13 C 0.196 3.804 14 S -0.496 6.496 15 N -0.268 5.268 16 C -0.012 4.012 17 C -0.163 4.163 18 C -0.359 4.359 19 S 0.360 5.640 20 C -0.291 4.291 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.238 0.762 30 H 0.154 0.846 31 H 0.180 0.820 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.530 -4.917 15.347 17.038 hybrid contribution 0.726 -2.834 -1.322 3.211 sum -4.804 -7.751 14.026 16.730 Atomic orbital electron populations 1.22209 0.95229 1.02361 1.03058 1.21800 0.94697 0.83827 1.03751 1.47886 1.57016 1.12257 1.06473 1.20001 0.97454 0.95578 0.75092 1.21153 0.95926 1.32496 1.06210 0.92533 1.24823 0.97782 0.94650 0.96240 1.69924 1.35506 1.33132 1.14335 0.86411 0.84576 0.78178 0.78072 1.19909 1.21084 1.20675 1.22253 0.82761 0.94148 0.81284 1.93004 1.65786 0.98793 1.92067 1.42162 1.63369 1.19074 1.02184 1.16266 1.05762 0.93109 0.86076 1.19802 1.02030 1.01367 0.93117 1.25173 1.10655 0.96840 1.03223 1.84227 1.59178 1.10814 1.09818 1.26489 1.05475 0.99788 0.97315 0.91238 0.92797 0.91221 0.88141 0.91646 0.94354 0.90374 0.92661 0.76221 0.84576 0.81967 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.15 0.38 -1.61 16 2 C 0.09 1.22 5.85 -4.05 -0.02 1.20 16 3 N -0.53 -10.50 2.46 -177.09 -0.43 -10.93 16 4 C 0.24 5.85 4.92 -5.19 -0.03 5.83 16 5 C -0.52 -14.22 9.39 -34.44 -0.32 -14.55 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.55 11.08 7.61 -86.91 -0.66 10.42 16 14 S -0.63 -15.34 24.29 -107.50 -2.61 -17.95 16 15 N -0.64 -9.93 5.27 -12.37 -0.07 -10.00 16 16 C 0.09 1.41 6.00 -85.11 -0.51 0.90 16 17 C -0.13 -1.65 10.16 -41.08 -0.42 -2.06 16 18 C -0.22 -2.54 11.22 29.03 0.33 -2.21 16 19 S 0.10 1.26 23.33 -107.50 -2.51 -1.25 16 20 C -0.15 -2.35 9.07 29.17 0.26 -2.08 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 25 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 26 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 27 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 29 H 0.40 4.88 6.62 -40.82 -0.27 4.61 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.19 3.42 6.17 -45.48 -0.28 3.14 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -32.56 298.03 -10.23 -42.79 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.72 Total: 3.52 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.09 Total: -2.36 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.24 Total: -46.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -14.08 SS G_CDS: -5.12 Total: -19.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.56 -10.23 -42.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790308187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.045 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds