Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47191 * 2 1 4 4 C 1.46499 * 120.00063 * 270.27230 * 3 2 1 5 5 C 1.50699 * 109.47359 * 269.72514 * 4 3 2 6 6 H 1.08000 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00191 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99972 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47353 * 120.00333 * 9 7 5 12 12 H 1.48500 * 109.46931 * 239.99922 * 9 7 5 13 13 C 1.34773 * 120.00566 * 90.00124 * 3 2 1 14 14 S 1.71194 * 120.00664 * 180.02562 * 13 3 2 15 15 N 1.34787 * 119.99580 * 359.97438 * 13 3 2 16 16 C 1.40763 * 119.99746 * 175.57969 * 15 13 3 17 17 C 1.38792 * 122.61904 * 221.95037 * 16 15 13 18 18 C 1.33372 * 114.89367 * 179.80567 * 17 16 15 19 19 S 1.75862 * 109.70185 * 0.44454 * 18 17 16 20 20 C 1.33794 * 122.62053 * 42.24876 * 16 15 13 21 21 H 1.08996 * 109.47640 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47245 * 300.00449 * 1 2 3 23 23 H 1.09005 * 109.47200 * 59.99937 * 1 2 3 24 24 H 1.09000 * 109.47319 * 240.00102 * 2 1 3 25 25 H 1.08998 * 109.47426 * 119.99790 * 2 1 3 26 26 H 1.09002 * 109.47057 * 29.72681 * 4 3 2 27 27 H 1.08996 * 109.47409 * 149.72607 * 4 3 2 28 28 H 0.96994 * 120.00250 * 179.97438 * 8 7 5 29 29 H 0.96993 * 119.99814 * 355.57601 * 15 13 3 30 30 H 1.08005 * 122.55326 * 0.02562 * 17 16 15 31 31 H 1.07999 * 125.15240 * 180.21121 * 18 17 16 32 32 H 1.07999 * 125.20315 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2568 2.0738 -1.2687 5 6 3.6800 1.8433 -1.7071 6 1 4.3409 1.2414 -1.1011 7 6 4.1384 2.4008 -2.8819 8 7 3.3334 3.1333 -3.6202 9 14 5.9024 2.1144 -3.4257 10 1 6.5959 1.2615 -2.4273 11 1 5.9094 1.4363 -4.7468 12 1 6.6046 3.4184 -3.5350 13 6 2.2430 2.0166 1.1671 14 16 2.8130 3.6309 1.1671 15 7 2.0178 1.3814 2.3344 16 6 2.3400 2.0107 3.5516 17 6 2.9458 1.3386 4.6040 18 6 3.1854 2.0848 5.6831 19 16 2.6216 3.7273 5.4052 20 6 2.0810 3.3021 3.7866 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.5758 1.6875 -2.0271 27 1 2.0857 3.1422 -1.1372 28 1 3.6560 3.5258 -4.4465 29 1 1.6338 0.4908 2.3356 30 1 3.2067 0.2918 4.5517 31 1 3.6513 1.7328 6.5917 32 1 1.6116 3.9799 3.0890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790308187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = 44.830128 kcal Electronic energy + Delta-G solvation = -16245.273437 eV Core-core repulsion = 13651.615901 eV Total energy + Delta-G solvation = -2593.657536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06542 -38.98461 -35.65367 -34.62182 -32.37951 -30.13869 -29.08623 -26.33278 -25.23842 -24.13803 -22.05935 -20.90280 -19.37641 -18.70155 -18.61761 -17.69887 -16.74567 -16.34442 -16.03034 -15.52034 -14.83902 -14.62592 -14.46937 -13.99441 -13.86488 -13.50455 -13.41346 -13.19578 -12.88884 -12.80368 -12.67281 -12.31379 -12.09206 -11.97818 -11.79724 -11.71455 -10.62832 -10.42809 -9.68002 -9.01875 -8.83171 -8.21192 -8.02589 -6.32191 0.07270 0.51046 0.70048 1.03134 1.13922 1.35901 1.40851 1.49672 1.66023 1.97333 2.36871 2.45627 3.12059 3.77737 4.08910 4.15150 4.27865 4.42382 4.56036 4.70568 4.78536 4.87179 4.97759 5.06225 5.17013 5.22299 5.31025 5.45358 5.66508 5.78170 5.95420 6.02449 6.44158 6.72379 7.34328 8.86801 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.005695 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.252778 B = 4915.283737 C = 5506.846886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.077 3.923 3 N -0.534 5.534 4 C 0.255 3.745 5 C -0.525 4.525 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.923 5.923 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.574 3.426 14 S -0.733 6.733 15 N -0.609 5.609 16 C 0.079 3.921 17 C -0.141 4.141 18 C -0.202 4.202 19 S 0.127 5.873 20 C -0.183 4.183 21 H 0.108 0.892 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.420 0.580 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -10.234 16.897 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.047 4.047 3 N -0.237 5.237 4 C 0.135 3.865 5 C -0.564 4.564 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.563 5.563 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.213 1.213 13 C 0.212 3.788 14 S -0.602 6.602 15 N -0.240 5.240 16 C -0.025 4.025 17 C -0.173 4.173 18 C -0.338 4.338 19 S 0.387 5.613 20 C -0.325 4.325 21 H 0.127 0.873 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.263 0.737 30 H 0.183 0.817 31 H 0.218 0.782 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.093 -7.885 17.417 19.785 hybrid contribution 0.503 -1.984 -1.791 2.720 sum -4.590 -9.868 15.625 19.042 Atomic orbital electron populations 1.22163 0.92950 1.04622 1.02228 1.22218 0.96502 0.80561 1.05393 1.47720 1.56983 1.14143 1.04881 1.19392 0.96230 0.93883 0.77023 1.21351 0.96922 1.32044 1.06043 0.93370 1.25629 1.01610 0.94477 0.96509 1.70027 1.37300 1.34108 1.14834 0.85459 0.79795 0.77786 0.78285 1.19533 1.19355 1.21257 1.21627 0.82154 0.92508 0.82557 1.93193 1.69827 1.03673 1.93467 1.41948 1.61630 1.19367 1.01069 1.16710 1.06318 0.93286 0.86226 1.19969 1.02274 1.02807 0.92247 1.25693 1.08600 0.95513 1.04036 1.84121 1.58308 1.11842 1.07034 1.26255 1.06855 0.99989 0.99393 0.87325 0.92469 0.93262 0.88404 0.88124 0.94739 0.94360 0.92485 0.73737 0.81735 0.78183 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.64 16 2 C 0.08 2.04 5.85 86.38 0.51 2.54 16 3 N -0.53 -21.04 2.46 -714.20 -1.75 -22.79 16 4 C 0.26 13.03 4.92 85.63 0.42 13.45 16 5 C -0.52 -29.27 9.39 25.60 0.24 -29.03 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.98 5.46 84.66 0.46 1.45 16 8 N -0.92 -55.07 13.29 21.45 0.28 -54.78 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 13 C 0.57 23.12 7.61 179.05 1.36 24.49 16 14 S -0.73 -37.55 24.29 -56.49 -1.37 -38.92 16 15 N -0.61 -18.05 5.27 -193.04 -1.02 -19.07 16 16 C 0.08 2.32 6.00 36.83 0.22 2.54 16 17 C -0.14 -3.08 10.16 21.30 0.22 -2.86 16 18 C -0.20 -3.84 11.22 66.72 0.75 -3.09 16 19 S 0.13 3.00 23.33 -56.49 -1.32 1.68 16 20 C -0.18 -5.86 9.07 66.81 0.61 -5.25 16 21 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 25 H 0.10 1.95 6.43 -2.39 -0.02 1.93 16 26 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 27 H 0.04 2.28 6.58 -2.39 -0.02 2.27 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 29 H 0.42 8.90 6.62 -92.71 -0.61 8.29 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.16 6.19 6.17 -7.36 -0.05 6.14 16 Total: -1.00 -75.06 298.03 2.86 -72.20 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.49 Total: 12.78 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.52 Total: 1.59 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.49 Total: -96.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: -34.55 SS G_CDS: -2.69 Total: -37.24 kcal Total: -75.06 2.86 -72.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790308187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.031 kcal (2) G-P(sol) polarization free energy of solvation -75.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds