Wall clock time and date at job start Mon Mar 30 2020 01:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48500 * 109.46744 * 269.99883 * 3 2 1 5 5 H 1.48492 * 109.47141 * 30.00073 * 3 2 1 6 6 H 1.48500 * 109.46777 * 150.00025 * 3 2 1 7 7 C 1.37882 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99605 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99665 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47017 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46801 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00018 * 179.97438 * 12 11 10 14 14 S 1.71200 * 119.99732 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00275 * 179.97438 * 13 12 11 16 16 C 1.40760 * 120.00340 * 185.47088 * 15 13 12 17 17 C 1.38797 * 122.61901 * 218.66834 * 16 15 13 18 18 C 1.33380 * 114.88961 * 179.97438 * 17 16 15 19 19 S 1.75863 * 109.70209 * 359.75931 * 18 17 16 20 20 C 1.33794 * 122.62356 * 38.64130 * 16 15 13 21 21 H 0.97003 * 119.99553 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47032 * 60.00513 * 9 7 2 23 23 H 1.09004 * 109.47576 * 300.00106 * 9 7 2 24 24 H 1.08994 * 109.47077 * 59.99914 * 10 9 7 25 25 H 1.09000 * 109.46922 * 299.99849 * 10 9 7 26 26 H 1.08994 * 109.47527 * 59.99870 * 11 10 9 27 27 H 1.09000 * 109.46890 * 299.99550 * 11 10 9 28 28 H 0.96999 * 119.99748 * 359.97438 * 12 11 10 29 29 H 0.97007 * 120.00141 * 5.47186 * 15 13 12 30 30 H 1.07997 * 122.55445 * 359.97438 * 17 16 15 31 31 H 1.07996 * 125.14878 * 180.02562 * 18 17 16 32 32 H 1.07999 * 125.19312 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 7 6.0396 -4.0180 0.0009 13 6 7.3647 -4.2644 0.0005 14 16 8.4773 -2.9632 -0.0001 15 7 7.8139 -5.5350 0.0017 16 6 9.1926 -5.7941 0.1176 17 6 9.8259 -6.8061 -0.5904 18 6 11.1358 -6.9148 -0.3640 19 16 11.6411 -5.6905 0.7930 20 6 9.9952 -5.0837 0.9184 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8905 24 1 3.6577 -3.1507 -0.8896 25 1 3.6584 -3.1503 0.8903 26 1 5.9147 -2.1229 0.8900 27 1 5.9147 -2.1230 -0.8899 28 1 5.4092 -4.7552 0.0016 29 1 7.1871 -6.2712 -0.0773 30 1 9.2981 -7.4560 -1.2727 31 1 11.7882 -7.6416 -0.8248 32 1 9.6810 -4.2607 1.5431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790323107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:07 Heat of formation + Delta-G solvation = 47.874306 kcal Electronic energy + Delta-G solvation = -15226.804153 eV Core-core repulsion = 12633.278623 eV Total energy + Delta-G solvation = -2593.525531 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97653 -37.81894 -35.12150 -33.40153 -31.60123 -29.20694 -27.50295 -25.02473 -23.17109 -22.91089 -20.51528 -20.14874 -18.70603 -17.97526 -16.94597 -16.66018 -15.62388 -15.47157 -15.02063 -14.31212 -14.14374 -13.87133 -13.21356 -12.99066 -12.76027 -12.69999 -12.09205 -11.89278 -11.25752 -11.18831 -11.11100 -10.97122 -10.23600 -10.02237 -9.82006 -9.73170 -9.30824 -9.01734 -8.60477 -8.38770 -7.82327 -7.14813 -6.11509 -4.11253 0.75521 1.26918 1.39400 1.71245 1.93551 2.46167 2.67570 3.29565 3.37386 3.41830 3.42374 4.40691 4.72622 4.97156 5.17996 5.22544 5.39876 5.48346 5.53710 5.64708 5.86189 5.86496 6.04294 6.26719 6.32809 6.49212 6.63326 6.79066 7.13151 7.16211 7.26436 7.69005 8.43093 8.90996 9.50318 11.01515 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.052763 B = 0.003132 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.545887 B = 8936.641918 C = 9345.239581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.115 3.885 12 N -0.666 5.666 13 C 0.555 3.445 14 S -0.629 6.629 15 N -0.625 5.625 16 C 0.094 3.906 17 C -0.133 4.133 18 C -0.217 4.217 19 S 0.126 5.874 20 C -0.158 4.158 21 H 0.264 0.736 22 H 0.022 0.978 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.399 0.601 29 H 0.406 0.594 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.243 -16.530 0.788 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.154 4.154 11 C -0.007 4.007 12 N -0.292 5.292 13 C 0.195 3.805 14 S -0.501 6.501 15 N -0.253 5.253 16 C -0.010 4.010 17 C -0.165 4.165 18 C -0.354 4.354 19 S 0.386 5.614 20 C -0.300 4.300 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.235 0.765 29 H 0.243 0.757 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 22.121 -14.974 1.441 26.751 hybrid contribution -2.311 -0.846 -0.896 2.620 sum 19.810 -15.821 0.545 25.358 Atomic orbital electron populations 1.69911 1.06362 1.27080 1.50707 1.25023 0.94758 0.99309 0.94296 0.86776 0.80467 0.83395 0.78721 1.20149 1.21322 1.18702 1.21049 0.89177 0.94523 1.51576 0.91087 1.19478 0.97308 0.90833 0.97035 1.21785 0.89975 1.01776 1.01816 1.22223 0.96018 0.77862 1.04567 1.45420 1.02946 1.12225 1.68591 1.22363 0.88304 0.89191 0.80598 1.93385 1.49669 1.33309 1.73786 1.42023 1.06676 1.04935 1.71660 1.16266 0.82900 1.00902 1.00970 1.19761 0.94375 1.00426 1.01953 1.25303 0.98530 1.05085 1.06445 1.84349 1.08508 1.26879 1.41658 1.26147 0.95760 1.04221 1.03834 0.92612 0.96001 0.96450 0.92049 0.92010 0.89457 0.89507 0.76486 0.75679 0.84171 0.81560 0.79599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -14.42 9.66 -34.44 -0.33 -14.75 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.12 -1.98 5.27 -26.73 -0.14 -2.12 16 11 C 0.12 1.73 5.13 -4.04 -0.02 1.71 16 12 N -0.67 -7.87 5.56 -62.03 -0.34 -8.22 16 13 C 0.56 7.18 7.84 -86.92 -0.68 6.50 16 14 S -0.63 -10.81 25.08 -107.50 -2.70 -13.51 16 15 N -0.63 -6.11 5.44 -12.37 -0.07 -6.18 16 16 C 0.09 0.99 5.98 -85.11 -0.51 0.48 16 17 C -0.13 -1.13 10.16 -41.07 -0.42 -1.55 16 18 C -0.22 -1.69 11.22 29.03 0.33 -1.36 16 19 S 0.13 1.12 23.33 -107.50 -2.51 -1.39 16 20 C -0.16 -1.80 9.03 29.17 0.26 -1.54 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 23 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.40 7.99 -51.93 -0.42 0.99 16 27 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 28 H 0.40 3.50 8.49 -40.82 -0.35 3.15 16 29 H 0.41 2.55 8.85 -40.82 -0.36 2.19 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.19 2.44 6.37 -50.43 -0.32 2.12 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -33.15 298.56 -10.64 -43.79 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -3.90 Total: 1.92 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.72 Total: -11.10 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.36 Total: -40.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -5.20 Total: -14.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.15 -10.64 -43.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790323107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.662 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds