Wall clock time and date at job start Mon Mar 30 2020 01:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48500 * 109.46744 * 269.99883 * 3 2 1 5 5 H 1.48492 * 109.47141 * 30.00073 * 3 2 1 6 6 H 1.48500 * 109.46777 * 150.00025 * 3 2 1 7 7 C 1.37882 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99605 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99665 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47017 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46801 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00018 * 179.97438 * 12 11 10 14 14 S 1.71200 * 119.99732 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00275 * 179.97438 * 13 12 11 16 16 C 1.40760 * 120.00340 * 185.47088 * 15 13 12 17 17 C 1.38797 * 122.61901 * 218.66834 * 16 15 13 18 18 C 1.33380 * 114.88961 * 179.97438 * 17 16 15 19 19 S 1.75863 * 109.70209 * 359.75931 * 18 17 16 20 20 C 1.33794 * 122.62356 * 38.64130 * 16 15 13 21 21 H 0.97003 * 119.99553 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47032 * 60.00513 * 9 7 2 23 23 H 1.09004 * 109.47576 * 300.00106 * 9 7 2 24 24 H 1.08994 * 109.47077 * 59.99914 * 10 9 7 25 25 H 1.09000 * 109.46922 * 299.99849 * 10 9 7 26 26 H 1.08994 * 109.47527 * 59.99870 * 11 10 9 27 27 H 1.09000 * 109.46890 * 299.99550 * 11 10 9 28 28 H 0.96999 * 119.99748 * 359.97438 * 12 11 10 29 29 H 0.97007 * 120.00141 * 5.47186 * 15 13 12 30 30 H 1.07997 * 122.55445 * 359.97438 * 17 16 15 31 31 H 1.07996 * 125.14878 * 180.02562 * 18 17 16 32 32 H 1.07999 * 125.19312 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 7 6.0396 -4.0180 0.0009 13 6 7.3647 -4.2644 0.0005 14 16 8.4773 -2.9632 -0.0001 15 7 7.8139 -5.5350 0.0017 16 6 9.1926 -5.7941 0.1176 17 6 9.8259 -6.8061 -0.5904 18 6 11.1358 -6.9148 -0.3640 19 16 11.6411 -5.6905 0.7930 20 6 9.9952 -5.0837 0.9184 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8905 24 1 3.6577 -3.1507 -0.8896 25 1 3.6584 -3.1503 0.8903 26 1 5.9147 -2.1229 0.8900 27 1 5.9147 -2.1230 -0.8899 28 1 5.4092 -4.7552 0.0016 29 1 7.1871 -6.2712 -0.0773 30 1 9.2981 -7.4560 -1.2727 31 1 11.7882 -7.6416 -0.8248 32 1 9.6810 -4.2607 1.5431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790323107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:06 Heat of formation + Delta-G solvation = 26.462255 kcal Electronic energy + Delta-G solvation = -15227.732649 eV Core-core repulsion = 12633.278623 eV Total energy + Delta-G solvation = -2594.454027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88712 -38.81268 -36.36940 -35.00827 -33.32195 -30.07304 -29.04629 -26.14129 -24.55289 -23.96179 -22.11139 -20.98097 -19.64430 -19.09309 -18.63809 -17.76114 -16.72918 -16.56019 -16.40488 -15.87008 -15.31546 -14.82910 -14.61894 -14.24760 -13.90023 -13.78833 -13.49758 -13.15009 -12.83396 -12.64473 -12.35602 -11.91060 -11.80922 -11.76721 -11.63355 -11.35393 -10.78631 -10.76188 -9.79197 -9.28619 -8.96858 -8.36608 -8.30202 -6.34078 -0.10942 0.38693 0.61186 0.83068 1.06413 1.37744 1.39928 1.49436 1.51290 1.84308 2.36233 2.53240 3.06274 3.93084 4.08443 4.14388 4.34590 4.40807 4.58076 4.68740 4.83353 4.90824 4.95252 5.01411 5.15002 5.27433 5.43842 5.52762 5.58039 5.64860 5.90411 6.25492 6.31339 6.74284 7.31188 8.86036 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.052763 B = 0.003132 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.545887 B = 8936.641918 C = 9345.239581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.134 3.866 12 N -0.652 5.652 13 C 0.577 3.423 14 S -0.715 6.715 15 N -0.601 5.601 16 C 0.085 3.915 17 C -0.141 4.141 18 C -0.204 4.204 19 S 0.135 5.865 20 C -0.188 4.188 21 H 0.266 0.734 22 H 0.023 0.977 23 H 0.021 0.979 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.418 0.582 29 H 0.427 0.573 30 H 0.167 0.833 31 H 0.198 0.802 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.881 -18.178 0.215 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.049 4.049 10 C -0.139 4.139 11 C 0.010 3.990 12 N -0.279 5.279 13 C 0.213 3.787 14 S -0.589 6.589 15 N -0.229 5.229 16 C -0.020 4.020 17 C -0.172 4.172 18 C -0.340 4.340 19 S 0.396 5.604 20 C -0.328 4.328 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.258 0.742 29 H 0.268 0.732 30 H 0.184 0.816 31 H 0.215 0.785 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.774 -16.707 0.873 29.070 hybrid contribution -2.824 -0.517 -0.703 2.956 sum 20.950 -17.224 0.170 27.122 Atomic orbital electron populations 1.70055 1.08221 1.28127 1.52709 1.25953 0.95539 1.03363 0.94238 0.85741 0.79618 0.78662 0.79193 1.19320 1.21192 1.16974 1.21446 0.91864 0.93235 1.50242 0.94269 1.19434 0.94000 0.94383 0.97081 1.21526 0.91324 0.98573 1.02516 1.21763 0.94195 0.79217 1.03779 1.45000 1.02892 1.11817 1.68165 1.21763 0.87617 0.89188 0.80115 1.93593 1.51840 1.36173 1.77275 1.41883 1.07263 1.04327 1.69410 1.16610 0.82850 1.01382 1.01191 1.19963 0.94719 1.00238 1.02310 1.25742 0.98719 1.04529 1.05046 1.84308 1.06825 1.27217 1.42069 1.26021 0.97582 1.04516 1.04731 0.92520 0.95904 0.96060 0.91357 0.91371 0.90386 0.90440 0.74164 0.73151 0.81577 0.78494 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 13.96 21.45 0.30 -58.43 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -29.24 9.66 25.60 0.25 -28.99 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.31 5.27 30.59 0.16 -3.15 16 11 C 0.13 3.80 5.13 86.38 0.44 4.25 16 12 N -0.65 -13.95 5.56 -350.18 -1.95 -15.90 16 13 C 0.58 14.01 7.84 179.06 1.40 15.41 16 14 S -0.72 -24.73 25.08 -56.49 -1.42 -26.14 16 15 N -0.60 -10.31 5.44 -193.04 -1.05 -11.36 16 16 C 0.08 1.62 5.98 36.83 0.22 1.84 16 17 C -0.14 -1.95 10.16 21.30 0.22 -1.73 16 18 C -0.20 -2.52 11.22 66.72 0.75 -1.77 16 19 S 0.13 2.23 23.33 -56.49 -1.32 0.91 16 20 C -0.19 -4.19 9.03 66.81 0.60 -3.59 16 21 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 22 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 23 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16 27 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 28 H 0.42 5.99 8.49 -92.71 -0.79 5.21 16 29 H 0.43 3.87 8.85 -92.70 -0.82 3.05 16 30 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.16 4.45 6.37 -4.22 -0.03 4.42 16 Total: -1.00 -73.73 298.56 0.56 -73.17 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -0.52 Total: 9.18 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.63 Total: -17.28 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.70 Total: -85.68 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: -22.50 SS G_CDS: -2.73 Total: -25.23 kcal Total: -73.73 0.56 -73.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790323107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.635 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds