Wall clock time and date at job start Mon Mar 30 2020 01:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 125.60914 * 2 1 4 4 C 1.40313 * 107.12115 * 180.02562 * 3 2 1 5 5 C 1.36633 * 106.70585 * 359.97438 * 4 3 2 6 6 C 1.46472 * 125.99579 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00389 * 0.02562 * 6 5 4 8 8 O 1.34899 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99849 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 S 1.80994 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.76194 * 100.00276 * 179.97438 * 12 11 10 14 14 H 1.08011 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00539 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99522 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00399 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47195 * 59.99669 * 17 15 13 19 19 H 1.48502 * 109.47363 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46965 * 300.00175 * 17 15 13 21 21 O 1.33919 * 125.60334 * 180.32688 * 2 1 3 22 22 H 1.08998 * 109.47319 * 89.99584 * 1 2 3 23 23 H 1.09003 * 109.47308 * 210.00368 * 1 2 3 24 24 H 1.08998 * 109.46716 * 330.00221 * 1 2 3 25 25 H 1.07997 * 126.44273 * 0.02562 * 3 2 1 26 26 H 1.08007 * 126.64191 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47070 * 299.99968 * 9 8 6 28 28 H 1.09001 * 109.46626 * 59.99986 * 9 8 6 29 29 H 1.09000 * 109.47486 * 299.99948 * 10 9 8 30 30 H 1.09001 * 109.47362 * 60.00671 * 10 9 8 31 31 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 32 32 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 33 33 H 0.96995 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0989 0.0000 4 6 3.6248 0.6540 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7400 -1.6090 -0.0013 7 8 5.8659 -1.1491 -0.0020 8 8 4.5574 -2.9456 -0.0015 9 6 5.7500 -3.7738 -0.0030 10 6 5.3461 -5.2495 -0.0023 11 6 6.6028 -6.1223 -0.0033 12 16 6.1250 -7.8680 -0.0032 13 6 7.7178 -8.6213 -0.0052 14 1 8.6059 -8.0065 -0.0065 15 6 7.8314 -10.0046 -0.0052 16 7 6.7491 -10.7538 -0.0042 17 14 9.5201 -10.8031 -0.0066 18 1 10.2679 -10.3817 1.2052 19 1 9.3692 -12.2804 -0.0069 20 1 10.2658 -10.3819 -1.2198 21 8 2.2867 -1.0888 -0.0062 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9612 2.1263 0.0004 26 1 4.5109 1.2715 -0.0011 27 1 6.3406 -3.5588 -0.8936 28 1 6.3425 -3.5592 0.8864 29 1 4.7558 -5.4642 0.8885 30 1 4.7534 -5.4644 -0.8915 31 1 7.1934 -5.9077 -0.8939 32 1 7.1951 -5.9073 0.8860 33 1 6.8285 -11.7205 -0.0045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805333829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:49 Heat of formation + Delta-G solvation = -88.210035 kcal Electronic energy + Delta-G solvation = -16997.711056 eV Core-core repulsion = 13923.238844 eV Total energy + Delta-G solvation = -3074.472212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05874 -40.26808 -36.82628 -33.75716 -33.44386 -32.45102 -32.40406 -28.27744 -26.38128 -25.43450 -23.14011 -21.97198 -21.35489 -20.65295 -18.58097 -17.43972 -17.09091 -17.07657 -16.23550 -15.68519 -14.81850 -14.59673 -14.49536 -13.81343 -13.69647 -13.43825 -13.34901 -13.32026 -12.79857 -12.77913 -12.36832 -12.12035 -11.37839 -11.16279 -11.05641 -10.99990 -10.85857 -10.66511 -10.42354 -10.31477 -9.65175 -9.06729 -8.92567 -8.35925 -6.56421 -6.24396 -3.95606 0.57098 1.89482 2.05550 2.68398 2.71518 3.22094 3.23278 3.27797 3.54021 4.19878 4.21669 4.49371 4.57148 4.90192 4.98800 5.09070 5.12339 5.13649 5.15706 5.21912 5.35441 5.44305 5.47018 5.56217 5.76593 5.86178 5.96093 6.10795 6.31460 6.44559 6.52982 6.66203 7.52795 7.58994 8.34842 9.21753 10.83755 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048792 B = 0.002692 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.728792 B =10398.175447 C =10940.852648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.031 3.969 3 C -0.229 4.229 4 C -0.105 4.105 5 C -0.064 4.064 6 C 0.551 3.449 7 O -0.490 6.490 8 O -0.344 6.344 9 C 0.072 3.928 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.123 6.123 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 O -0.147 6.147 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 22.820 0.010 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 C -0.248 4.248 4 C -0.125 4.125 5 C -0.114 4.114 6 C 0.395 3.605 7 O -0.379 6.379 8 O -0.260 6.260 9 C -0.002 4.002 10 C -0.137 4.137 11 C -0.263 4.263 12 S 0.105 5.895 13 C -0.667 4.667 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 O -0.042 6.042 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.178 0.822 26 H 0.182 0.818 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.055 21.901 0.009 24.999 hybrid contribution 2.534 0.194 -0.009 2.542 sum -9.521 22.095 0.000 24.059 Atomic orbital electron populations 1.20478 0.84212 1.04808 1.04283 1.23010 0.94612 0.84073 1.00504 1.21604 0.91992 1.00025 1.11133 1.21986 0.99080 0.92204 0.99187 1.20782 0.81362 0.92759 1.16520 1.19153 0.86193 0.81645 0.73492 1.90948 1.22910 1.77507 1.46571 1.86649 1.39421 1.16719 1.83205 1.23390 0.84199 0.89706 1.02931 1.21298 0.98590 0.89302 1.04489 1.23180 0.98622 1.01087 1.03405 1.84663 1.14451 0.93490 1.96887 1.22658 0.91415 0.93832 1.58802 0.90874 1.25021 0.97992 0.96237 0.94519 1.70008 1.27985 1.05478 1.47041 0.86198 0.82369 0.77931 0.78885 1.19899 1.20799 1.19905 1.84136 1.15569 1.34530 1.69951 0.89236 0.89752 0.88729 0.82246 0.81792 0.90759 0.90763 0.90235 0.90232 0.91661 0.91656 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 36.01 0.37 0.01 16 2 C 0.03 0.27 7.31 -35.40 -0.26 0.01 16 3 C -0.23 -1.82 10.77 -39.89 -0.43 -2.25 16 4 C -0.10 -1.06 10.62 -39.38 -0.42 -1.48 16 5 C -0.06 -0.81 7.18 -36.85 -0.26 -1.08 16 6 C 0.55 8.08 7.93 34.05 0.27 8.35 16 7 O -0.49 -7.90 16.66 -19.36 -0.32 -8.22 16 8 O -0.34 -5.26 10.23 -42.48 -0.43 -5.69 16 9 C 0.07 1.08 5.48 37.16 0.20 1.29 16 10 C -0.10 -1.65 5.60 -26.73 -0.15 -1.80 16 11 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 12 S -0.12 -3.22 21.44 -107.50 -2.30 -5.52 16 13 C -0.52 -14.88 9.50 30.94 0.29 -14.58 16 14 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 15 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 17 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 O -0.15 -1.77 10.67 4.72 0.05 -1.72 16 22 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 26 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -33.10 314.56 -7.02 -40.12 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.19 Total: -3.31 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.26 Total: -11.68 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.73 Total: -25.26 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.71 Total: -15.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.10 -7.02 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805333829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.087 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds