Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35166 * 125.60914 * 2 1 4 4 C 1.40313 * 107.12115 * 180.02562 * 3 2 1 5 5 C 1.36633 * 106.70585 * 359.97438 * 4 3 2 6 6 C 1.46472 * 125.99579 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00389 * 0.02562 * 6 5 4 8 8 O 1.34899 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99849 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 S 1.80994 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.76194 * 100.00276 * 179.97438 * 12 11 10 14 14 H 1.08011 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00539 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99522 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00399 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47195 * 59.99669 * 17 15 13 19 19 H 1.48502 * 109.47363 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46965 * 300.00175 * 17 15 13 21 21 O 1.33919 * 125.60334 * 180.32688 * 2 1 3 22 22 H 1.08998 * 109.47319 * 89.99584 * 1 2 3 23 23 H 1.09003 * 109.47308 * 210.00368 * 1 2 3 24 24 H 1.08998 * 109.46716 * 330.00221 * 1 2 3 25 25 H 1.07997 * 126.44273 * 0.02562 * 3 2 1 26 26 H 1.08007 * 126.64191 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47070 * 299.99968 * 9 8 6 28 28 H 1.09001 * 109.46626 * 59.99986 * 9 8 6 29 29 H 1.09000 * 109.47486 * 299.99948 * 10 9 8 30 30 H 1.09001 * 109.47362 * 60.00671 * 10 9 8 31 31 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 32 32 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 33 33 H 0.96995 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0989 0.0000 4 6 3.6248 0.6540 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7400 -1.6090 -0.0013 7 8 5.8659 -1.1491 -0.0020 8 8 4.5574 -2.9456 -0.0015 9 6 5.7500 -3.7738 -0.0030 10 6 5.3461 -5.2495 -0.0023 11 6 6.6028 -6.1223 -0.0033 12 16 6.1250 -7.8680 -0.0032 13 6 7.7178 -8.6213 -0.0052 14 1 8.6059 -8.0065 -0.0065 15 6 7.8314 -10.0046 -0.0052 16 7 6.7491 -10.7538 -0.0042 17 14 9.5201 -10.8031 -0.0066 18 1 10.2679 -10.3817 1.2052 19 1 9.3692 -12.2804 -0.0069 20 1 10.2658 -10.3819 -1.2198 21 8 2.2867 -1.0888 -0.0062 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9612 2.1263 0.0004 26 1 4.5109 1.2715 -0.0011 27 1 6.3406 -3.5588 -0.8936 28 1 6.3425 -3.5592 0.8864 29 1 4.7558 -5.4642 0.8885 30 1 4.7534 -5.4644 -0.8915 31 1 7.1934 -5.9077 -0.8939 32 1 7.1951 -5.9073 0.8860 33 1 6.8285 -11.7205 -0.0045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805333829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -107.458989 kcal Electronic energy + Delta-G solvation = -16998.545754 eV Core-core repulsion = 13923.238844 eV Total energy + Delta-G solvation = -3075.306910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.82554 -41.40486 -38.00871 -34.99430 -34.59796 -34.35065 -33.06208 -29.16075 -27.96263 -27.20389 -24.08663 -22.76400 -22.72465 -21.51161 -19.74746 -19.34703 -18.24692 -18.10961 -17.22240 -16.90415 -16.51826 -16.09606 -15.93448 -15.13125 -14.51840 -14.28394 -14.22169 -14.06107 -14.01614 -13.82865 -13.72349 -13.17645 -12.94174 -12.82518 -12.68004 -12.48443 -12.45982 -12.14052 -11.61430 -11.52796 -11.15271 -11.14643 -10.38050 -9.65235 -8.69856 -8.38670 -6.15805 -0.31769 1.07962 1.18207 1.32409 1.41086 1.47628 1.65169 1.72810 1.95483 2.26532 2.95831 3.26637 3.48286 3.78011 3.79961 3.81686 3.90194 4.10664 4.29265 4.38183 4.45386 4.52940 4.64384 4.64780 4.72331 4.86365 4.96899 5.00334 5.09719 5.23081 5.38912 5.39416 5.79305 6.16902 6.43810 7.03491 8.70594 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048792 B = 0.002692 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.728792 B =10398.175447 C =10940.852648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 C -0.228 4.228 4 C -0.091 4.091 5 C -0.110 4.110 6 C 0.551 3.449 7 O -0.514 6.514 8 O -0.353 6.353 9 C 0.079 3.921 10 C -0.087 4.087 11 C -0.091 4.091 12 S -0.187 6.187 13 C -0.541 4.541 14 H 0.075 0.925 15 C 0.015 3.985 16 N -0.907 5.907 17 Si 0.995 3.005 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.264 1.264 21 O -0.171 6.171 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.196 0.804 26 H 0.176 0.824 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 24.700 0.004 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.017 4.017 3 C -0.246 4.246 4 C -0.111 4.111 5 C -0.159 4.159 6 C 0.398 3.602 7 O -0.406 6.406 8 O -0.270 6.270 9 C 0.004 3.996 10 C -0.125 4.125 11 C -0.240 4.240 12 S 0.042 5.958 13 C -0.689 4.689 14 H 0.093 0.907 15 C -0.190 4.190 16 N -0.544 5.544 17 Si 0.817 3.183 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.189 1.189 21 O -0.068 6.068 22 H 0.123 0.877 23 H 0.102 0.898 24 H 0.141 0.859 25 H 0.213 0.787 26 H 0.194 0.806 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.293 23.795 0.003 26.783 hybrid contribution 2.442 -0.231 -0.010 2.453 sum -9.851 23.564 -0.006 25.540 Atomic orbital electron populations 1.20751 0.81239 1.06207 1.05643 1.23970 0.96227 0.83464 0.97998 1.22030 0.90643 1.01557 1.10415 1.22354 1.00721 0.91303 0.96713 1.20637 0.81329 0.93179 1.20732 1.19461 0.86828 0.81236 0.72722 1.90916 1.23894 1.77614 1.48131 1.86627 1.39328 1.17484 1.83524 1.23192 0.84272 0.88447 1.03659 1.21113 0.96897 0.90087 1.04438 1.23055 1.00135 0.96848 1.03915 1.84663 1.15231 0.98829 1.97080 1.23026 0.92031 0.94678 1.59119 0.90662 1.26083 1.02434 0.96777 0.93686 1.70142 1.30505 1.05898 1.47811 0.85049 0.76902 0.76995 0.79375 1.18905 1.19951 1.18915 1.84115 1.15607 1.36275 1.70765 0.87692 0.89769 0.85882 0.78733 0.80635 0.90075 0.90082 0.90336 0.90333 0.91073 0.91066 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.41 71.24 0.74 0.26 16 2 C 0.04 0.54 7.31 24.98 0.18 0.73 16 3 C -0.23 -3.01 10.77 22.07 0.24 -2.77 16 4 C -0.09 -1.72 10.62 22.40 0.24 -1.49 16 5 C -0.11 -2.76 7.18 24.04 0.17 -2.59 16 6 C 0.55 16.36 7.93 69.97 0.55 16.92 16 7 O -0.51 -16.71 16.66 19.44 0.32 -16.39 16 8 O -0.35 -10.90 10.23 -56.75 -0.58 -11.48 16 9 C 0.08 2.34 5.48 71.98 0.39 2.74 16 10 C -0.09 -2.90 5.60 30.60 0.17 -2.73 16 11 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 12 S -0.19 -9.97 21.44 -56.49 -1.21 -11.18 16 13 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 14 H 0.08 4.17 7.80 -2.90 -0.02 4.14 16 15 C 0.02 0.87 5.49 84.86 0.47 1.34 16 16 N -0.91 -54.93 13.22 21.65 0.29 -54.65 16 17 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 O -0.17 -4.04 10.67 -4.95 -0.05 -4.10 16 22 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 26 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.77 8.14 -2.40 -0.02 2.75 16 32 H 0.07 2.77 8.14 -2.40 -0.02 2.75 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -72.68 314.56 6.11 -66.57 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.11 Total: 6.64 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 4.21 Total: -21.46 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.29 Total: -54.65 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.31 Total: -31.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -9.97 SS G_CDS: -1.21 Total: -11.18 kcal Total: -72.68 6.11 -66.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805333829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.888 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds