Wall clock time and date at job start Mon Mar 30 2020 01:15:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50710 * 1
3 3 O 1.33623 * 125.80686 * 2 1
4 4 C 1.34220 * 110.92527 * 179.77167 * 3 2 1
5 5 C 1.34155 * 109.14230 * 0.42057 * 4 3 2
6 6 C 1.36496 * 125.80994 * 180.02562 * 2 1 3
7 7 C 1.47231 * 127.20033 * 359.95732 * 6 2 1
8 8 O 1.21538 * 119.99926 * 0.02562 * 7 6 2
9 9 O 1.34768 * 120.00125 * 180.02562 * 7 6 2
10 10 C 1.45197 * 117.00039 * 179.97438 * 9 7 6
11 11 C 1.53004 * 109.47284 * 179.97438 * 10 9 7
12 12 C 1.52998 * 109.47252 * 180.02562 * 11 10 9
13 13 S 1.81001 * 109.46834 * 180.02562 * 12 11 10
14 14 C 1.76199 * 99.99680 * 180.02562 * 13 12 11
15 15 H 1.08000 * 120.00412 * 359.97438 * 14 13 12
16 16 C 1.38802 * 120.00098 * 180.02562 * 14 13 12
17 17 N 1.31624 * 120.00562 * 179.97438 * 16 14 13
18 18 Si 1.86804 * 119.99901 * 359.97438 * 16 14 13
19 19 H 1.48501 * 109.47076 * 89.99796 * 18 16 14
20 20 H 1.48500 * 109.47249 * 210.00126 * 18 16 14
21 21 H 1.48504 * 109.47158 * 330.00160 * 18 16 14
22 22 H 1.08996 * 109.46945 * 269.97422 * 1 2 3
23 23 H 1.09002 * 109.47016 * 29.97186 * 1 2 3
24 24 H 1.09004 * 109.46579 * 149.97274 * 1 2 3
25 25 H 1.07995 * 125.42719 * 180.27806 * 4 3 2
26 26 H 1.08002 * 127.02806 * 179.87409 * 5 4 3
27 27 H 1.09002 * 109.47208 * 299.99910 * 10 9 7
28 28 H 1.09003 * 109.47301 * 60.00101 * 10 9 7
29 29 H 1.09002 * 109.46982 * 300.00120 * 11 10 9
30 30 H 1.09003 * 109.46811 * 59.99872 * 11 10 9
31 31 H 1.09002 * 109.47171 * 299.99938 * 12 11 10
32 32 H 1.08998 * 109.46906 * 60.00247 * 12 11 10
33 33 H 0.96994 * 120.00504 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.2889 1.0837 0.0000
4 6 3.5860 0.7390 0.0050
5 6 3.6857 -0.5989 -0.0009
6 6 2.3057 -1.1069 -0.0005
7 6 1.8755 -2.5150 -0.0003
8 8 0.6913 -2.7886 0.0000
9 8 2.7948 -3.5005 -0.0003
10 6 2.2984 -4.8650 0.0005
11 6 3.4797 -5.8374 -0.0003
12 6 2.9566 -7.2752 -0.0001
13 16 4.3541 -8.4255 -0.0003
14 6 3.4874 -9.9597 -0.0007
15 1 2.4075 -9.9699 -0.0004
16 6 4.1927 -11.1552 -0.0005
17 7 3.5454 -12.3013 -0.0003
18 14 6.0606 -11.1376 -0.0004
19 1 6.5555 -11.1327 1.3998
20 1 6.5670 -12.3455 -0.7002
21 1 6.5443 -9.9206 -0.7006
22 1 -0.3633 -0.0005 1.0276
23 1 -0.3633 0.8903 -0.5134
24 1 -0.3632 -0.8898 -0.5143
25 1 4.4170 1.4287 0.0103
26 1 4.5939 -1.1834 -0.0009
27 1 1.6918 -5.0304 0.8909
28 1 1.6909 -5.0312 -0.8891
29 1 4.0859 -5.6719 -0.8909
30 1 4.0876 -5.6714 0.8891
31 1 2.3501 -7.4411 0.8903
32 1 2.3490 -7.4409 -0.8897
33 1 4.0382 -13.1367 -0.0005
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000805371225.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:15:50
Heat of formation + Delta-G solvation = -109.777049 kcal
Electronic energy + Delta-G solvation = -17164.599185 eV
Core-core repulsion = 14089.191756 eV
Total energy + Delta-G solvation = -3075.407428 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.076 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.64558 -41.27480 -37.86547 -34.98759 -34.69321 -34.12372 -32.88520 -28.74519
-28.01248 -27.40518 -24.78969 -22.85907 -22.43821 -20.82673 -19.65700 -19.05557
-18.05248 -17.86681 -17.22778 -17.11232 -16.78814 -16.09837 -15.94786 -15.20761
-14.93481 -14.40102 -14.21706 -14.17915 -13.93027 -13.85111 -13.81696 -13.37107
-13.05451 -12.79086 -12.61947 -12.42930 -12.27008 -11.83569 -11.61640 -11.55320
-11.17280 -10.95730 -10.61727 -9.65644 -9.01777 -8.52736 -6.25123 0.03438
1.01712 1.04364 1.32649 1.39143 1.49244 1.74051 1.94049 1.96434
2.24347 2.65117 2.85321 3.52396 3.61843 3.78385 3.81161 3.93385
4.09056 4.27214 4.28114 4.42750 4.57575 4.61570 4.63043 4.72367
4.82510 4.96658 5.04455 5.13794 5.32655 5.37303 5.68769 5.94830
6.09666 6.62822 6.90796 8.60405
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.048916 B = 0.002869 C = 0.002718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 572.273148 B = 9756.915743 C =10298.136735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 C 0.092 3.908
3 O -0.173 6.173
4 C -0.026 4.026
5 C -0.188 4.188
6 C -0.268 4.268
7 C 0.536 3.464
8 O -0.534 6.534
9 O -0.351 6.351
10 C 0.079 3.921
11 C -0.087 4.087
12 C -0.074 4.074
13 S -0.206 6.206
14 C -0.526 4.526
15 H 0.051 0.949
16 C 0.037 3.963
17 N -0.922 5.922
18 Si 0.926 3.074
19 H -0.261 1.261
20 H -0.263 1.263
21 H -0.227 1.227
22 H 0.103 0.897
23 H 0.107 0.893
24 H 0.093 0.907
25 H 0.255 0.745
26 H 0.172 0.828
27 H 0.074 0.926
28 H 0.074 0.926
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.024 29.393 -0.076 29.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.039 3.961
3 O -0.068 6.068
4 C -0.090 4.090
5 C -0.207 4.207
6 C -0.271 4.271
7 C 0.384 3.616
8 O -0.427 6.427
9 O -0.267 6.267
10 C 0.004 3.996
11 C -0.125 4.125
12 C -0.222 4.222
13 S 0.022 5.978
14 C -0.673 4.673
15 H 0.069 0.931
16 C -0.168 4.168
17 N -0.560 5.560
18 Si 0.747 3.253
19 H -0.185 1.185
20 H -0.188 1.188
21 H -0.150 1.150
22 H 0.121 0.879
23 H 0.126 0.874
24 H 0.111 0.889
25 H 0.271 0.729
26 H 0.190 0.810
27 H 0.093 0.907
28 H 0.093 0.907
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.090 0.910
32 H 0.091 0.909
33 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 0.718 29.547 -0.082 29.556
hybrid contribution -0.971 -1.543 0.051 1.824
sum -0.253 28.004 -0.031 28.005
Atomic orbital electron populations
1.20756 0.82227 1.05798 1.05520 1.23188 0.95047 0.82799 0.95090
1.83831 1.18136 1.34039 1.70843 1.24735 0.83374 0.96507 1.04414
1.23173 0.96171 0.95270 1.06066 1.20390 0.96079 0.89858 1.20738
1.20286 0.83441 0.85950 0.71916 1.90806 1.18744 1.84909 1.48218
1.86510 1.39608 1.16699 1.83887 1.23058 0.96911 0.76474 1.03158
1.21138 0.97035 0.89323 1.05034 1.22968 0.99288 0.95658 1.04316
1.83807 1.15066 1.01338 1.97596 1.22350 0.94835 0.91581 1.58548
0.93052 1.25801 1.04442 0.93861 0.92662 1.70034 1.38633 0.98287
1.49083 0.85704 0.78706 0.80580 0.80299 1.18511 1.18751 1.14998
0.87870 0.87445 0.88865 0.72937 0.81003 0.90717 0.90723 0.89632
0.89614 0.90993 0.90950 0.91341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.20 9.89 71.24 0.70 -0.49 16
2 C 0.09 1.69 7.38 25.28 0.19 1.87 16
3 O -0.17 -2.63 10.52 4.68 0.05 -2.59 16
4 C -0.03 -0.30 12.03 66.89 0.80 0.51 16
5 C -0.19 -3.16 11.05 23.65 0.26 -2.90 16
6 C -0.27 -6.00 6.32 -19.01 -0.12 -6.12 16
7 C 0.54 14.73 7.95 70.19 0.56 15.29 16
8 O -0.53 -16.37 14.64 19.71 0.29 -16.08 16
9 O -0.35 -9.68 10.13 -56.79 -0.58 -10.26 16
10 C 0.08 2.18 5.48 71.98 0.39 2.57 16
11 C -0.09 -2.56 5.60 30.59 0.17 -2.39 16
12 C -0.07 -2.78 5.67 71.98 0.41 -2.37 16
13 S -0.21 -9.80 19.41 -56.49 -1.10 -10.90 16
14 C -0.53 -30.97 10.04 67.96 0.68 -30.29 16
15 H 0.05 3.30 8.03 -2.91 -0.02 3.27 16
16 C 0.04 2.18 5.50 84.86 0.47 2.65 16
17 N -0.92 -56.93 13.97 21.65 0.30 -56.63 16
18 Si 0.93 43.79 27.74 68.60 1.90 45.69 16
19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16
20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16
21 H -0.23 -10.25 6.74 99.48 0.67 -9.58 16
22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
23 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
24 H 0.09 1.63 6.49 -2.38 -0.02 1.61 16
25 H 0.25 0.39 8.06 -2.91 -0.02 0.36 16
26 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16
27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16
32 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16
33 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16
Total: -1.00 -71.76 308.33 6.46 -65.30
By element:
Atomic # 1 Polarization: 6.06 SS G_CDS: 1.07 Total: 7.13 kcal
Atomic # 6 Polarization: -26.19 SS G_CDS: 4.52 Total: -21.68 kcal
Atomic # 7 Polarization: -56.93 SS G_CDS: 0.30 Total: -56.63 kcal
Atomic # 8 Polarization: -28.69 SS G_CDS: -0.24 Total: -28.92 kcal
Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.69 kcal
Atomic # 16 Polarization: -9.80 SS G_CDS: -1.10 Total: -10.90 kcal
Total: -71.76 6.46 -65.30 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805371225.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.477 kcal
(2) G-P(sol) polarization free energy of solvation -71.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds