Wall clock time and date at job start Mon Mar 30 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33623 * 125.80686 * 2 1 4 4 C 1.34220 * 110.92527 * 179.77167 * 3 2 1 5 5 C 1.34155 * 109.14230 * 0.42057 * 4 3 2 6 6 C 1.36496 * 125.80994 * 180.02562 * 2 1 3 7 7 C 1.47231 * 127.20033 * 359.95732 * 6 2 1 8 8 O 1.21538 * 119.99926 * 0.02562 * 7 6 2 9 9 O 1.34768 * 120.00125 * 180.02562 * 7 6 2 10 10 C 1.45197 * 117.00039 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47284 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47252 * 180.02562 * 11 10 9 13 13 S 1.81001 * 109.46834 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99680 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00412 * 359.97438 * 14 13 12 16 16 C 1.38802 * 120.00098 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00562 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47076 * 89.99796 * 18 16 14 20 20 H 1.48500 * 109.47249 * 210.00126 * 18 16 14 21 21 H 1.48504 * 109.47158 * 330.00160 * 18 16 14 22 22 H 1.08996 * 109.46945 * 269.97422 * 1 2 3 23 23 H 1.09002 * 109.47016 * 29.97186 * 1 2 3 24 24 H 1.09004 * 109.46579 * 149.97274 * 1 2 3 25 25 H 1.07995 * 125.42719 * 180.27806 * 4 3 2 26 26 H 1.08002 * 127.02806 * 179.87409 * 5 4 3 27 27 H 1.09002 * 109.47208 * 299.99910 * 10 9 7 28 28 H 1.09003 * 109.47301 * 60.00101 * 10 9 7 29 29 H 1.09002 * 109.46982 * 300.00120 * 11 10 9 30 30 H 1.09003 * 109.46811 * 59.99872 * 11 10 9 31 31 H 1.09002 * 109.47171 * 299.99938 * 12 11 10 32 32 H 1.08998 * 109.46906 * 60.00247 * 12 11 10 33 33 H 0.96994 * 120.00504 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7390 0.0050 5 6 3.6857 -0.5989 -0.0009 6 6 2.3057 -1.1069 -0.0005 7 6 1.8755 -2.5150 -0.0003 8 8 0.6913 -2.7886 0.0000 9 8 2.7948 -3.5005 -0.0003 10 6 2.2984 -4.8650 0.0005 11 6 3.4797 -5.8374 -0.0003 12 6 2.9566 -7.2752 -0.0001 13 16 4.3541 -8.4255 -0.0003 14 6 3.4874 -9.9597 -0.0007 15 1 2.4075 -9.9699 -0.0004 16 6 4.1927 -11.1552 -0.0005 17 7 3.5454 -12.3013 -0.0003 18 14 6.0606 -11.1376 -0.0004 19 1 6.5555 -11.1327 1.3998 20 1 6.5670 -12.3455 -0.7002 21 1 6.5443 -9.9206 -0.7006 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3632 -0.8898 -0.5143 25 1 4.4170 1.4287 0.0103 26 1 4.5939 -1.1834 -0.0009 27 1 1.6918 -5.0304 0.8909 28 1 1.6909 -5.0312 -0.8891 29 1 4.0859 -5.6719 -0.8909 30 1 4.0876 -5.6714 0.8891 31 1 2.3501 -7.4411 0.8903 32 1 2.3490 -7.4409 -0.8897 33 1 4.0382 -13.1367 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805371225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:50 Heat of formation + Delta-G solvation = -109.777049 kcal Electronic energy + Delta-G solvation = -17164.599185 eV Core-core repulsion = 14089.191756 eV Total energy + Delta-G solvation = -3075.407428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.64558 -41.27480 -37.86547 -34.98759 -34.69321 -34.12372 -32.88520 -28.74519 -28.01248 -27.40518 -24.78969 -22.85907 -22.43821 -20.82673 -19.65700 -19.05557 -18.05248 -17.86681 -17.22778 -17.11232 -16.78814 -16.09837 -15.94786 -15.20761 -14.93481 -14.40102 -14.21706 -14.17915 -13.93027 -13.85111 -13.81696 -13.37107 -13.05451 -12.79086 -12.61947 -12.42930 -12.27008 -11.83569 -11.61640 -11.55320 -11.17280 -10.95730 -10.61727 -9.65644 -9.01777 -8.52736 -6.25123 0.03438 1.01712 1.04364 1.32649 1.39143 1.49244 1.74051 1.94049 1.96434 2.24347 2.65117 2.85321 3.52396 3.61843 3.78385 3.81161 3.93385 4.09056 4.27214 4.28114 4.42750 4.57575 4.61570 4.63043 4.72367 4.82510 4.96658 5.04455 5.13794 5.32655 5.37303 5.68769 5.94830 6.09666 6.62822 6.90796 8.60405 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048916 B = 0.002869 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.273148 B = 9756.915743 C =10298.136735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.092 3.908 3 O -0.173 6.173 4 C -0.026 4.026 5 C -0.188 4.188 6 C -0.268 4.268 7 C 0.536 3.464 8 O -0.534 6.534 9 O -0.351 6.351 10 C 0.079 3.921 11 C -0.087 4.087 12 C -0.074 4.074 13 S -0.206 6.206 14 C -0.526 4.526 15 H 0.051 0.949 16 C 0.037 3.963 17 N -0.922 5.922 18 Si 0.926 3.074 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.227 1.227 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.255 0.745 26 H 0.172 0.828 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 29.393 -0.076 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 O -0.068 6.068 4 C -0.090 4.090 5 C -0.207 4.207 6 C -0.271 4.271 7 C 0.384 3.616 8 O -0.427 6.427 9 O -0.267 6.267 10 C 0.004 3.996 11 C -0.125 4.125 12 C -0.222 4.222 13 S 0.022 5.978 14 C -0.673 4.673 15 H 0.069 0.931 16 C -0.168 4.168 17 N -0.560 5.560 18 Si 0.747 3.253 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.150 1.150 22 H 0.121 0.879 23 H 0.126 0.874 24 H 0.111 0.889 25 H 0.271 0.729 26 H 0.190 0.810 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.718 29.547 -0.082 29.556 hybrid contribution -0.971 -1.543 0.051 1.824 sum -0.253 28.004 -0.031 28.005 Atomic orbital electron populations 1.20756 0.82227 1.05798 1.05520 1.23188 0.95047 0.82799 0.95090 1.83831 1.18136 1.34039 1.70843 1.24735 0.83374 0.96507 1.04414 1.23173 0.96171 0.95270 1.06066 1.20390 0.96079 0.89858 1.20738 1.20286 0.83441 0.85950 0.71916 1.90806 1.18744 1.84909 1.48218 1.86510 1.39608 1.16699 1.83887 1.23058 0.96911 0.76474 1.03158 1.21138 0.97035 0.89323 1.05034 1.22968 0.99288 0.95658 1.04316 1.83807 1.15066 1.01338 1.97596 1.22350 0.94835 0.91581 1.58548 0.93052 1.25801 1.04442 0.93861 0.92662 1.70034 1.38633 0.98287 1.49083 0.85704 0.78706 0.80580 0.80299 1.18511 1.18751 1.14998 0.87870 0.87445 0.88865 0.72937 0.81003 0.90717 0.90723 0.89632 0.89614 0.90993 0.90950 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.89 71.24 0.70 -0.49 16 2 C 0.09 1.69 7.38 25.28 0.19 1.87 16 3 O -0.17 -2.63 10.52 4.68 0.05 -2.59 16 4 C -0.03 -0.30 12.03 66.89 0.80 0.51 16 5 C -0.19 -3.16 11.05 23.65 0.26 -2.90 16 6 C -0.27 -6.00 6.32 -19.01 -0.12 -6.12 16 7 C 0.54 14.73 7.95 70.19 0.56 15.29 16 8 O -0.53 -16.37 14.64 19.71 0.29 -16.08 16 9 O -0.35 -9.68 10.13 -56.79 -0.58 -10.26 16 10 C 0.08 2.18 5.48 71.98 0.39 2.57 16 11 C -0.09 -2.56 5.60 30.59 0.17 -2.39 16 12 C -0.07 -2.78 5.67 71.98 0.41 -2.37 16 13 S -0.21 -9.80 19.41 -56.49 -1.10 -10.90 16 14 C -0.53 -30.97 10.04 67.96 0.68 -30.29 16 15 H 0.05 3.30 8.03 -2.91 -0.02 3.27 16 16 C 0.04 2.18 5.50 84.86 0.47 2.65 16 17 N -0.92 -56.93 13.97 21.65 0.30 -56.63 16 18 Si 0.93 43.79 27.74 68.60 1.90 45.69 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.23 -10.25 6.74 99.48 0.67 -9.58 16 22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.63 6.49 -2.38 -0.02 1.61 16 25 H 0.25 0.39 8.06 -2.91 -0.02 0.36 16 26 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 33 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -71.76 308.33 6.46 -65.30 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.07 Total: 7.13 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.52 Total: -21.68 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.30 Total: -56.63 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.24 Total: -28.92 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.69 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -1.10 Total: -10.90 kcal Total: -71.76 6.46 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805371225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.477 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds