Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48502 * 109.47249 * 240.00416 * 3 2 1 5 5 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47042 * 120.00585 * 3 2 1 7 7 C 1.38797 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00097 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00217 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47373 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47132 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47006 * 180.02562 * 12 11 10 14 14 C 1.34232 * 116.99932 * 179.97438 * 13 12 11 15 15 O 1.20819 * 120.00123 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99666 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 H 0.97003 * 120.00064 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46927 * 60.00146 * 10 9 7 24 24 H 1.09001 * 109.47486 * 300.00314 * 10 9 7 25 25 H 1.08995 * 109.46810 * 59.99787 * 11 10 9 26 26 H 1.09001 * 109.46869 * 300.00444 * 11 10 9 27 27 H 1.08994 * 109.47289 * 59.99409 * 12 11 10 28 28 H 1.09000 * 109.46706 * 299.99649 * 12 11 10 29 29 H 1.09005 * 109.47178 * 60.00279 * 16 14 13 30 30 H 1.09000 * 109.47367 * 300.00200 * 16 14 13 31 31 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 32 32 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 33 33 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1513 -6.3077 -0.0005 13 8 2.6422 -7.6675 -0.0018 14 6 3.5485 -8.6576 -0.0019 15 8 4.7282 -8.3967 -0.0015 16 6 3.0946 -10.0946 -0.0026 17 6 4.2982 -11.0015 -0.0020 18 6 4.9703 -11.5089 1.1337 19 6 5.9853 -12.2660 0.6798 20 8 5.9588 -12.2507 -0.6629 21 6 4.9396 -11.4830 -1.0819 22 1 -0.4850 0.8401 0.0004 23 1 3.1244 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 1.3709 -5.4840 -0.8914 26 1 1.3704 -5.4846 0.8885 27 1 3.7593 -6.1477 0.8898 28 1 3.7605 -6.1474 -0.8901 29 1 2.4954 -10.2860 -0.8928 30 1 2.4949 -10.2867 0.8871 31 1 4.7198 -11.3207 2.1672 32 1 6.6989 -12.7980 1.2914 33 1 4.6790 -11.2860 -2.1113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805532570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = -88.695342 kcal Electronic energy + Delta-G solvation = -16934.447421 eV Core-core repulsion = 13859.954164 eV Total energy + Delta-G solvation = -3074.493257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.85380 -40.39190 -36.80978 -34.35806 -33.48740 -32.45037 -30.82112 -28.55592 -26.37866 -25.41369 -22.06442 -21.89444 -21.30508 -20.28528 -17.82733 -17.77995 -17.35646 -16.71968 -16.43512 -15.91926 -15.05525 -14.86368 -14.82427 -14.28520 -13.68952 -13.33047 -13.08808 -12.96840 -12.69163 -12.62881 -12.08642 -11.89088 -11.34318 -11.13037 -10.97668 -10.93535 -10.70455 -10.58673 -10.28289 -10.00852 -9.63918 -9.07557 -8.85216 -8.36954 -6.57307 -6.25227 -3.96456 1.45659 2.11062 2.15640 2.78944 2.89336 3.22235 3.22586 3.27209 3.55323 4.19586 4.35325 4.45137 4.64645 4.81743 5.05456 5.10239 5.12913 5.16295 5.19589 5.34541 5.40146 5.48970 5.66892 5.77148 5.83165 5.90375 6.13646 6.18106 6.44431 6.46717 6.67385 6.79757 7.58231 7.73127 8.34070 9.20989 10.82874 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.060928 B = 0.002478 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.448696 B =11295.806241 C =11548.361232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.357 6.357 14 C 0.457 3.543 15 O -0.503 6.503 16 C -0.042 4.042 17 C -0.175 4.175 18 C -0.198 4.198 19 C -0.043 4.043 20 O -0.176 6.176 21 C -0.020 4.020 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.203 0.797 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -23.755 0.186 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.274 6.274 14 C 0.300 3.700 15 O -0.390 6.390 16 C -0.080 4.080 17 C -0.177 4.177 18 C -0.217 4.217 19 C -0.110 4.110 20 O -0.071 6.071 21 C -0.088 4.088 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.219 0.781 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.567 -23.844 0.002 24.732 hybrid contribution 1.902 1.565 0.214 2.472 sum 8.469 -22.279 0.216 23.836 Atomic orbital electron populations 1.70007 1.05924 1.27527 1.47038 1.25017 0.95104 0.99122 0.94515 0.86202 0.79221 0.81095 0.78887 1.19903 1.20788 1.19910 1.22653 0.94557 0.90691 1.58809 0.90898 1.84641 1.08806 0.99221 1.96888 1.23184 1.03423 0.96387 1.03324 1.21284 0.96456 0.91566 1.04301 1.23255 0.97715 0.76685 1.02533 1.86474 1.40353 1.16930 1.83593 1.23594 0.84829 0.88655 0.72953 1.90681 1.18694 1.84973 1.44689 1.19591 0.95905 0.85807 1.06664 1.19816 1.00717 1.03617 0.93524 1.21699 0.98093 1.02092 0.99846 1.23984 1.01866 1.04384 0.80748 1.84077 1.44140 1.56003 1.22883 1.23857 0.88991 0.96240 0.99698 0.92187 0.91753 0.91756 0.90341 0.90353 0.91230 0.91230 0.86760 0.86644 0.83395 0.78065 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.54 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.21 21.44 -107.50 -2.30 -5.52 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 C -0.10 -1.59 5.60 -26.73 -0.15 -1.74 16 12 C 0.07 1.06 5.47 37.16 0.20 1.27 16 13 O -0.36 -4.83 10.22 -39.26 -0.40 -5.23 16 14 C 0.46 5.76 7.95 36.01 0.29 6.05 16 15 O -0.50 -7.98 15.78 -18.74 -0.30 -8.28 16 16 C -0.04 -0.35 6.33 -29.03 -0.18 -0.54 16 17 C -0.18 -1.67 4.66 -104.74 -0.49 -2.16 16 18 C -0.20 -1.80 10.87 -39.70 -0.43 -2.23 16 19 C -0.04 -0.34 12.09 29.42 0.36 0.01 16 20 O -0.18 -1.68 10.65 5.70 0.06 -1.62 16 21 C -0.02 -0.18 12.01 29.42 0.35 0.18 16 22 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 24 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 29 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -34.14 313.23 -6.35 -40.49 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.19 Total: -2.06 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 0.35 Total: -13.84 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.73 Total: -25.13 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.64 Total: -15.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.30 Total: -5.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.14 -6.35 -40.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805532570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.207 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds