Wall clock time and date at job start Mon Mar 30 2020 01:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48502 * 109.47249 * 240.00416 * 3 2 1 5 5 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47042 * 120.00585 * 3 2 1 7 7 C 1.38797 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00097 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00217 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47373 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47132 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47006 * 180.02562 * 12 11 10 14 14 C 1.34232 * 116.99932 * 179.97438 * 13 12 11 15 15 O 1.20819 * 120.00123 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99666 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 H 0.97003 * 120.00064 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46927 * 60.00146 * 10 9 7 24 24 H 1.09001 * 109.47486 * 300.00314 * 10 9 7 25 25 H 1.08995 * 109.46810 * 59.99787 * 11 10 9 26 26 H 1.09001 * 109.46869 * 300.00444 * 11 10 9 27 27 H 1.08994 * 109.47289 * 59.99409 * 12 11 10 28 28 H 1.09000 * 109.46706 * 299.99649 * 12 11 10 29 29 H 1.09005 * 109.47178 * 60.00279 * 16 14 13 30 30 H 1.09000 * 109.47367 * 300.00200 * 16 14 13 31 31 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 32 32 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 33 33 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1513 -6.3077 -0.0005 13 8 2.6422 -7.6675 -0.0018 14 6 3.5485 -8.6576 -0.0019 15 8 4.7282 -8.3967 -0.0015 16 6 3.0946 -10.0946 -0.0026 17 6 4.2982 -11.0015 -0.0020 18 6 4.9703 -11.5089 1.1337 19 6 5.9853 -12.2660 0.6798 20 8 5.9588 -12.2507 -0.6629 21 6 4.9396 -11.4830 -1.0819 22 1 -0.4850 0.8401 0.0004 23 1 3.1244 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 1.3709 -5.4840 -0.8914 26 1 1.3704 -5.4846 0.8885 27 1 3.7593 -6.1477 0.8898 28 1 3.7605 -6.1474 -0.8901 29 1 2.4954 -10.2860 -0.8928 30 1 2.4949 -10.2867 0.8871 31 1 4.7198 -11.3207 2.1672 32 1 6.6989 -12.7980 1.2914 33 1 4.6790 -11.2860 -2.1113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805532570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:01 Heat of formation + Delta-G solvation = -108.906694 kcal Electronic energy + Delta-G solvation = -16935.323851 eV Core-core repulsion = 13859.954164 eV Total energy + Delta-G solvation = -3075.369687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.48800 -41.43861 -37.90781 -35.10503 -34.85091 -34.58312 -31.48627 -29.33301 -28.01560 -27.21603 -23.12125 -22.58075 -22.50194 -21.02106 -19.58848 -18.71898 -18.43699 -17.80929 -17.37298 -16.90282 -16.71110 -16.12190 -16.05841 -15.56978 -14.93046 -14.59979 -14.10374 -13.89035 -13.82827 -13.67993 -13.46636 -13.10765 -12.93959 -12.64353 -12.53924 -12.39876 -12.36372 -11.74634 -11.51227 -11.45801 -11.14667 -10.67913 -10.37506 -9.47546 -8.68967 -8.38580 -6.15332 0.80635 1.18516 1.25582 1.36771 1.40767 1.47930 1.67340 2.07003 2.26880 2.31064 2.95838 3.28327 3.65422 3.83541 3.87590 3.91066 3.98809 4.11244 4.16557 4.31465 4.51824 4.54880 4.60584 4.67583 4.75664 5.01183 5.06535 5.12444 5.26881 5.38895 5.44731 5.57721 6.16874 6.16960 6.72535 7.03710 8.70506 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.060928 B = 0.002478 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.448696 B =11295.806241 C =11548.361232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.539 6.539 16 C -0.034 4.034 17 C -0.196 4.196 18 C -0.221 4.221 19 C -0.045 4.045 20 O -0.190 6.190 21 C -0.029 4.029 22 H 0.272 0.728 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.233 0.767 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -24.460 0.147 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.690 4.690 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.429 6.429 16 C -0.071 4.071 17 C -0.197 4.197 18 C -0.240 4.240 19 C -0.111 4.111 20 O -0.086 6.086 21 C -0.097 4.097 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.250 0.750 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.378 -24.571 -0.035 25.655 hybrid contribution 1.672 1.662 0.237 2.369 sum 9.050 -22.909 0.202 24.633 Atomic orbital electron populations 1.70135 1.07627 1.28703 1.47760 1.26060 0.96057 1.03089 0.93704 0.85070 0.77944 0.76101 0.79332 1.18961 1.19899 1.18988 1.23020 0.94827 0.91977 1.59149 0.90833 1.84607 1.13057 1.00785 1.97064 1.23076 1.00788 0.96688 1.03567 1.21104 0.97026 0.89722 1.04542 1.22978 0.96529 0.77276 1.02679 1.86476 1.40653 1.16530 1.83707 1.24456 0.84200 0.89654 0.71385 1.90670 1.20192 1.85495 1.46521 1.19741 0.95981 0.82360 1.09030 1.20091 1.01483 1.04189 0.93958 1.22015 0.98765 1.02802 1.00460 1.24648 1.02061 1.03984 0.80452 1.84080 1.44495 1.56315 1.23679 1.24410 0.88607 0.95829 1.00846 0.91871 0.91474 0.91414 0.90082 0.90193 0.91224 0.91056 0.83862 0.84559 0.82484 0.75039 0.75801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.37 13.22 21.65 0.29 -54.09 16 2 C 0.02 0.91 5.49 84.86 0.47 1.38 16 3 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.17 9.50 67.95 0.65 -30.52 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.67 21.44 -56.49 -1.21 -10.88 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.24 16 11 C -0.09 -2.70 5.60 30.60 0.17 -2.53 16 12 C 0.08 2.25 5.47 71.98 0.39 2.64 16 13 O -0.36 -9.04 10.22 -51.44 -0.53 -9.56 16 14 C 0.46 10.82 7.95 71.24 0.57 11.38 16 15 O -0.54 -16.63 15.78 21.99 0.35 -16.28 16 16 C -0.03 -0.49 6.33 29.10 0.18 -0.31 16 17 C -0.20 -3.42 4.66 -19.94 -0.09 -3.51 16 18 C -0.22 -3.74 10.87 22.19 0.24 -3.50 16 19 C -0.04 -0.66 12.09 66.97 0.81 0.14 16 20 O -0.19 -3.42 10.65 -2.52 -0.03 -3.45 16 21 C -0.03 -0.48 12.01 66.97 0.80 0.33 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.07 1.94 8.13 -2.39 -0.02 1.93 16 28 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 29 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -73.70 313.23 6.60 -67.10 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.10 Total: 9.09 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 4.60 Total: -27.73 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.29 Total: -54.09 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.21 Total: -29.29 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.88 kcal Total: -73.70 6.60 -67.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805532570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.803 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds