Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34164 * 125.42657 * 2 1 4 4 C 1.47058 * 105.94897 * 179.97438 * 3 2 1 5 5 C 1.47228 * 127.19826 * 179.97438 * 4 3 2 6 6 O 1.21532 * 120.00415 * 359.97438 * 5 4 3 7 7 O 1.34774 * 119.99757 * 179.97438 * 5 4 3 8 8 C 1.45201 * 117.00065 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47231 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47153 * 180.02562 * 9 8 7 11 11 S 1.80998 * 109.46925 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99817 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00632 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00229 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99818 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00348 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46821 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46885 * 120.00064 * 16 14 12 19 19 H 1.48500 * 109.47088 * 240.00531 * 16 14 12 20 20 C 1.36496 * 105.59677 * 359.97438 * 4 3 2 21 21 O 1.33628 * 108.38430 * 0.02562 * 20 4 3 22 22 H 1.08994 * 109.46884 * 90.00322 * 1 2 3 23 23 H 1.08994 * 109.46906 * 210.00346 * 1 2 3 24 24 H 1.08996 * 109.47227 * 330.00171 * 1 2 3 25 25 H 1.07999 * 127.02221 * 359.71455 * 3 2 1 26 26 H 1.08998 * 109.47247 * 300.00291 * 8 7 5 27 27 H 1.08994 * 109.46733 * 60.00193 * 8 7 5 28 28 H 1.08998 * 109.47009 * 300.00151 * 9 8 7 29 29 H 1.08998 * 109.47235 * 59.99794 * 9 8 7 30 30 H 1.08998 * 109.47126 * 299.99883 * 10 9 8 31 31 H 1.09002 * 109.46780 * 60.00106 * 10 9 8 32 32 H 0.96993 * 120.00269 * 179.97438 * 15 14 12 33 33 H 1.07995 * 125.80867 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0933 0.0000 4 6 3.6712 0.6029 0.0006 5 6 4.9014 1.4117 0.0003 6 8 4.8310 2.6250 -0.0010 7 8 6.1056 0.8066 0.0015 8 6 7.2755 1.6667 0.0006 9 6 8.5409 0.8065 0.0015 10 6 9.7736 1.7128 0.0012 11 16 11.2704 0.6952 0.0015 12 6 12.4990 1.9582 0.0018 13 1 12.2051 2.9975 0.0013 14 6 13.8445 1.6176 0.0027 15 7 14.2028 0.3510 0.0027 16 14 15.1470 2.9566 0.0023 17 1 14.4885 4.2876 0.0016 18 1 15.9934 2.8242 1.2152 19 1 15.9944 2.8225 -1.2098 20 6 3.5788 -0.7589 0.0015 21 8 2.2851 -1.0936 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9591 2.1230 -0.0043 26 1 7.2641 2.2946 -0.8903 27 1 7.2636 2.2971 0.8896 28 1 8.5524 0.1783 0.8922 29 1 8.5525 0.1763 -0.8877 30 1 9.7622 2.3413 -0.8893 31 1 9.7617 2.3426 0.8907 32 1 15.1431 0.1129 0.0030 33 1 4.4098 -1.4486 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805536005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = -91.516913 kcal Electronic energy + Delta-G solvation = -16904.428773 eV Core-core repulsion = 13829.813163 eV Total energy + Delta-G solvation = -3074.615609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.93737 -40.15655 -36.63196 -33.64932 -33.40556 -32.46205 -32.36208 -27.45184 -26.53652 -25.52019 -24.10391 -21.44832 -21.35295 -20.28936 -17.88931 -17.49284 -17.12995 -16.85101 -16.34550 -16.07218 -14.82837 -14.65002 -14.57906 -14.09235 -13.63311 -13.46007 -13.32156 -13.20862 -12.78578 -12.69852 -12.29978 -12.05682 -11.35998 -11.15899 -11.00555 -10.91356 -10.73871 -10.60401 -10.30675 -10.16600 -9.63966 -9.09219 -8.96911 -8.36448 -6.57423 -6.25755 -3.96705 0.93114 1.61430 2.36350 2.59807 2.92031 3.20167 3.21961 3.29363 3.53938 4.19046 4.21004 4.35371 4.64981 4.89245 5.00810 5.09424 5.09705 5.12351 5.18408 5.21442 5.38461 5.41424 5.48319 5.62828 5.76869 5.89494 5.95971 6.14910 6.41391 6.43904 6.61830 6.66136 7.58791 7.71418 8.34430 9.20857 10.82478 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067267 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.149183 B =11009.428382 C =11394.527688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.161 4.161 4 C -0.226 4.226 5 C 0.535 3.465 6 O -0.507 6.507 7 O -0.354 6.354 8 C 0.075 3.925 9 C -0.098 4.098 10 C -0.114 4.114 11 S -0.125 6.125 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.056 3.944 21 O -0.172 6.172 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.161 0.839 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.267 0.733 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.318 -2.270 0.001 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.180 4.180 4 C -0.229 4.229 5 C 0.380 3.620 6 O -0.397 6.397 7 O -0.271 6.271 8 C 0.000 4.000 9 C -0.136 4.136 10 C -0.263 4.263 11 S 0.104 5.896 12 C -0.665 4.665 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.014 4.014 21 O -0.067 6.067 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.179 0.821 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -25.142 -3.435 0.001 25.376 hybrid contribution 1.052 2.510 -0.006 2.721 sum -24.090 -0.925 -0.005 24.108 Atomic orbital electron populations 1.20344 0.84416 1.04379 1.03850 1.22325 0.94278 0.83443 1.06416 1.22458 0.89375 0.99957 1.06182 1.20601 0.92184 0.93248 1.16833 1.19956 0.83101 0.86080 0.72878 1.90845 1.87882 1.14878 1.46061 1.86505 1.14683 1.42012 1.83931 1.23296 0.81305 0.92645 1.02764 1.21290 0.89862 0.98131 1.04317 1.23180 0.98184 1.01547 1.03399 1.84643 0.95060 1.13049 1.96880 1.22738 0.91995 0.93269 1.58537 0.90770 1.25030 0.97975 0.96299 0.94541 1.70026 1.17320 1.15914 1.47231 0.86086 0.80475 0.80906 0.77896 1.19574 1.20547 1.20541 1.24785 0.84012 0.95623 0.97005 1.83767 1.16586 1.35563 1.70807 0.89818 0.90232 0.89074 0.82123 0.91025 0.91020 0.90316 0.90311 0.91693 0.91688 0.92301 0.75925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.40 36.01 0.37 0.06 16 2 C -0.02 -0.14 7.28 -35.74 -0.26 -0.40 16 3 C -0.16 -1.62 10.90 -37.44 -0.41 -2.02 16 4 C -0.23 -2.64 6.31 -103.30 -0.65 -3.29 16 5 C 0.54 7.69 7.95 34.38 0.27 7.96 16 6 O -0.51 -8.64 16.77 -19.29 -0.32 -8.96 16 7 O -0.35 -5.00 10.07 -40.69 -0.41 -5.41 16 8 C 0.07 1.10 5.48 37.16 0.20 1.30 16 9 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 S -0.12 -3.22 21.44 -107.50 -2.30 -5.53 16 12 C -0.52 -14.77 9.50 30.94 0.29 -14.47 16 13 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 14 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 15 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 16 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.06 0.51 11.94 30.10 0.36 0.86 16 21 O -0.17 -1.55 10.52 7.72 0.08 -1.47 16 22 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -33.63 314.92 -6.55 -40.18 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.19 Total: -3.05 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.15 Total: -11.89 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.73 Total: -25.11 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.65 Total: -15.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.63 -6.55 -40.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805536005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.338 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds