Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34164 * 125.42657 * 2 1 4 4 C 1.47058 * 105.94897 * 179.97438 * 3 2 1 5 5 C 1.47228 * 127.19826 * 179.97438 * 4 3 2 6 6 O 1.21532 * 120.00415 * 359.97438 * 5 4 3 7 7 O 1.34774 * 119.99757 * 179.97438 * 5 4 3 8 8 C 1.45201 * 117.00065 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47231 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47153 * 180.02562 * 9 8 7 11 11 S 1.80998 * 109.46925 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99817 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00632 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00229 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99818 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00348 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46821 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46885 * 120.00064 * 16 14 12 19 19 H 1.48500 * 109.47088 * 240.00531 * 16 14 12 20 20 C 1.36496 * 105.59677 * 359.97438 * 4 3 2 21 21 O 1.33628 * 108.38430 * 0.02562 * 20 4 3 22 22 H 1.08994 * 109.46884 * 90.00322 * 1 2 3 23 23 H 1.08994 * 109.46906 * 210.00346 * 1 2 3 24 24 H 1.08996 * 109.47227 * 330.00171 * 1 2 3 25 25 H 1.07999 * 127.02221 * 359.71455 * 3 2 1 26 26 H 1.08998 * 109.47247 * 300.00291 * 8 7 5 27 27 H 1.08994 * 109.46733 * 60.00193 * 8 7 5 28 28 H 1.08998 * 109.47009 * 300.00151 * 9 8 7 29 29 H 1.08998 * 109.47235 * 59.99794 * 9 8 7 30 30 H 1.08998 * 109.47126 * 299.99883 * 10 9 8 31 31 H 1.09002 * 109.46780 * 60.00106 * 10 9 8 32 32 H 0.96993 * 120.00269 * 179.97438 * 15 14 12 33 33 H 1.07995 * 125.80867 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0933 0.0000 4 6 3.6712 0.6029 0.0006 5 6 4.9014 1.4117 0.0003 6 8 4.8310 2.6250 -0.0010 7 8 6.1056 0.8066 0.0015 8 6 7.2755 1.6667 0.0006 9 6 8.5409 0.8065 0.0015 10 6 9.7736 1.7128 0.0012 11 16 11.2704 0.6952 0.0015 12 6 12.4990 1.9582 0.0018 13 1 12.2051 2.9975 0.0013 14 6 13.8445 1.6176 0.0027 15 7 14.2028 0.3510 0.0027 16 14 15.1470 2.9566 0.0023 17 1 14.4885 4.2876 0.0016 18 1 15.9934 2.8242 1.2152 19 1 15.9944 2.8225 -1.2098 20 6 3.5788 -0.7589 0.0015 21 8 2.2851 -1.0936 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9591 2.1230 -0.0043 26 1 7.2641 2.2946 -0.8903 27 1 7.2636 2.2971 0.8896 28 1 8.5524 0.1783 0.8922 29 1 8.5525 0.1763 -0.8877 30 1 9.7622 2.3413 -0.8893 31 1 9.7617 2.3426 0.8907 32 1 15.1431 0.1129 0.0030 33 1 4.4098 -1.4486 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805536005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = -111.149250 kcal Electronic energy + Delta-G solvation = -16905.280095 eV Core-core repulsion = 13829.813163 eV Total energy + Delta-G solvation = -3075.466931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.65649 -41.29880 -37.82490 -34.96819 -34.59642 -34.17211 -33.04020 -28.49389 -27.77723 -27.26929 -25.15188 -22.74634 -22.20217 -21.24797 -19.56805 -18.58153 -18.31305 -17.85688 -17.23324 -17.01938 -16.90741 -16.14114 -15.93386 -15.23153 -14.78089 -14.19526 -14.16339 -14.05352 -13.89870 -13.77968 -13.75051 -13.15881 -12.97113 -12.74429 -12.63032 -12.42844 -12.41089 -11.89870 -11.56141 -11.48168 -11.16694 -10.98943 -10.36994 -9.63682 -8.68641 -8.39100 -6.15353 0.06937 0.90261 1.23259 1.38175 1.38204 1.51055 1.75853 1.91087 1.94003 2.26123 2.95491 3.27265 3.47651 3.60373 3.83179 3.93030 3.95615 4.13307 4.25210 4.30982 4.44456 4.57896 4.67543 4.72782 4.75182 4.87582 5.00503 5.03800 5.10438 5.33009 5.35759 5.39716 5.92440 6.17314 6.60466 7.03660 8.70457 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067267 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.149183 B =11009.428382 C =11394.527688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.186 4.186 4 C -0.263 4.263 5 C 0.537 3.463 6 O -0.542 6.542 7 O -0.350 6.350 8 C 0.082 3.918 9 C -0.084 4.084 10 C -0.093 4.093 11 S -0.183 6.183 12 C -0.540 4.540 13 H 0.073 0.927 14 C 0.015 3.985 15 N -0.906 5.906 16 Si 0.995 3.005 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.078 3.922 21 O -0.173 6.173 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.162 0.838 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.272 0.728 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.530 -2.227 -0.004 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C -0.205 4.205 4 C -0.266 4.266 5 C 0.384 3.616 6 O -0.434 6.434 7 O -0.267 6.267 8 C 0.006 3.994 9 C -0.123 4.123 10 C -0.242 4.242 11 S 0.046 5.954 12 C -0.688 4.688 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.542 5.542 16 Si 0.817 3.183 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.196 1.196 20 C 0.008 3.992 21 O -0.068 6.068 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.180 0.820 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -26.376 -3.410 -0.004 26.595 hybrid contribution 1.293 2.435 -0.006 2.757 sum -25.083 -0.975 -0.010 25.102 Atomic orbital electron populations 1.20566 0.81529 1.05733 1.05181 1.22978 0.95720 0.82516 1.04178 1.22616 0.89101 1.00822 1.07962 1.20658 0.91647 0.94382 1.19871 1.20395 0.83497 0.85984 0.71721 1.90821 1.88189 1.16346 1.48078 1.86488 1.14621 1.41650 1.83950 1.23076 0.81033 0.92218 1.03045 1.21103 0.88921 0.97553 1.04709 1.23072 0.96357 1.01057 1.03677 1.84599 0.98309 1.15454 1.97053 1.23085 0.93161 0.93626 1.58887 0.90835 1.26067 1.00337 0.98839 0.93755 1.70146 1.18104 1.18070 1.47928 0.84956 0.77260 0.77780 0.78311 1.18775 1.19652 1.19645 1.25270 0.84689 0.95027 0.94262 1.83817 1.16613 1.35889 1.70439 0.88366 0.88944 0.87646 0.81989 0.90825 0.90819 0.89959 0.89952 0.91364 0.91357 0.91889 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 71.24 0.74 0.30 16 2 C -0.01 -0.09 7.28 24.76 0.18 0.09 16 3 C -0.19 -3.61 10.90 23.66 0.26 -3.35 16 4 C -0.26 -5.95 6.31 -19.01 -0.12 -6.07 16 5 C 0.54 15.28 7.95 70.18 0.56 15.84 16 6 O -0.54 -18.66 16.77 19.73 0.33 -18.33 16 7 O -0.35 -9.56 10.07 -56.85 -0.57 -10.14 16 8 C 0.08 2.32 5.48 71.98 0.39 2.72 16 9 C -0.08 -2.65 5.60 30.59 0.17 -2.48 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.25 16 11 S -0.18 -9.59 21.44 -56.49 -1.21 -10.80 16 12 C -0.54 -31.03 9.50 67.95 0.65 -30.38 16 13 H 0.07 4.09 7.80 -2.91 -0.02 4.06 16 14 C 0.02 0.86 5.49 84.86 0.47 1.32 16 15 N -0.91 -54.32 13.22 21.65 0.29 -54.03 16 16 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 C 0.08 1.26 11.94 67.41 0.80 2.07 16 21 O -0.17 -2.73 10.52 4.72 0.05 -2.68 16 22 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.25 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.82 314.92 6.52 -66.29 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.11 Total: 6.94 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.51 Total: -23.19 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.29 Total: -54.03 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.19 Total: -31.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.21 Total: -10.80 kcal Total: -72.82 6.52 -66.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805536005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.855 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds