Wall clock time and date at job start Mon Mar 30 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47123 * 270.00044 * 3 2 1 5 5 H 1.48503 * 109.46941 * 29.99774 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00013 * 3 2 1 7 7 C 1.37872 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00130 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00279 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47376 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47203 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99788 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99777 * 180.02562 * 11 10 9 14 14 N 1.40098 * 119.99546 * 180.02562 * 13 11 10 15 15 C 1.39114 * 120.00074 * 180.02562 * 14 13 11 16 16 C 1.39492 * 120.14587 * 179.97438 * 15 14 13 17 17 C 1.38525 * 117.91562 * 179.97438 * 16 15 14 18 18 C 1.38955 * 118.02365 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 120.00627 * 179.97438 * 18 17 16 20 20 N 1.31873 * 119.98694 * 0.02562 * 18 17 16 21 21 N 1.28344 * 122.26547 * 0.02562 * 20 18 17 22 22 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47076 * 59.99998 * 9 7 2 24 24 H 1.09001 * 109.46888 * 299.99966 * 9 7 2 25 25 H 1.09002 * 109.46848 * 60.00069 * 10 9 7 26 26 H 1.09001 * 109.47257 * 299.99952 * 10 9 7 27 27 H 0.96998 * 120.00286 * 359.97438 * 13 11 10 28 28 H 0.97006 * 120.00490 * 359.97438 * 14 13 11 29 29 H 1.08001 * 121.04667 * 359.95308 * 16 15 14 30 30 H 1.08000 * 120.98829 * 179.73068 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0036 13 7 6.2024 -3.8037 -0.0028 14 7 7.6034 -3.8037 -0.0034 15 6 8.2990 -5.0084 -0.0046 16 6 9.6940 -5.0119 -0.0058 17 6 10.3394 -6.2375 -0.0064 18 6 9.5583 -7.3867 -0.0053 19 17 10.3136 -8.9498 -0.0066 20 7 8.2432 -7.2898 -0.0042 21 7 7.6397 -6.1571 -0.0046 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6800 -0.8912 25 1 3.6578 -3.1505 -0.8908 26 1 3.6586 -3.1502 0.8893 27 1 5.7175 -4.6438 -0.0021 28 1 8.0885 -2.9636 -0.0038 29 1 10.2533 -4.0880 -0.0065 30 1 11.4177 -6.2981 -0.0116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812514841.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:04 Heat of formation + Delta-G solvation = 48.773019 kcal Electronic energy + Delta-G solvation = -17049.998960 eV Core-core repulsion = 13908.175480 eV Total energy + Delta-G solvation = -3141.823480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43043 -39.62693 -37.24824 -36.44429 -33.76714 -33.61161 -32.71077 -31.41029 -29.53203 -26.21994 -25.14288 -23.98017 -21.78163 -20.26875 -18.89237 -18.18188 -17.54906 -17.07271 -16.68004 -15.92678 -15.68618 -15.24284 -14.51508 -14.14004 -13.99595 -13.68423 -13.47795 -12.71012 -12.63169 -12.00798 -11.82997 -11.79187 -11.53060 -11.04618 -10.75010 -10.31406 -10.17584 -10.07662 -9.96636 -9.89123 -9.61228 -9.26410 -8.56661 -7.93720 -6.08115 -4.07894 0.30915 0.54411 1.31098 1.70532 2.76597 3.11440 3.33146 3.40159 3.42714 3.49083 3.95790 4.16564 4.24066 4.45178 4.47564 4.97456 5.14510 5.25434 5.26829 5.46362 5.90101 5.93865 6.30966 6.56181 7.01006 7.24979 7.31426 7.46573 7.70542 8.22293 8.38041 8.47010 8.94434 9.53885 11.04519 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.059478 B = 0.002889 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.645557 B = 9690.507362 C =10140.706642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.110 4.110 11 C 0.513 3.487 12 O -0.540 6.540 13 N -0.529 5.529 14 N -0.499 5.499 15 C 0.347 3.653 16 C -0.162 4.162 17 C -0.056 4.056 18 C 0.053 3.947 19 Cl -0.016 7.016 20 N -0.178 5.178 21 N -0.292 5.292 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.433 0.567 28 H 0.444 0.556 29 H 0.160 0.840 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.392 -13.894 0.017 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.035 4.035 10 C -0.152 4.152 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.279 5.279 14 N -0.226 5.226 15 C 0.104 3.896 16 C -0.196 4.196 17 C -0.085 4.085 18 C -0.124 4.124 19 Cl 0.012 6.988 20 N -0.022 5.022 21 N -0.147 5.147 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.276 0.724 28 H 0.290 0.710 29 H 0.178 0.822 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 22.043 -13.819 0.021 26.016 hybrid contribution 1.850 1.368 -0.029 2.301 sum 23.893 -12.452 -0.008 26.943 Atomic orbital electron populations 1.69907 1.06288 1.27056 1.50676 1.24964 0.94716 0.99216 0.94270 0.86796 0.80557 0.83441 0.78732 1.20224 1.21386 1.18605 1.21062 0.88993 0.94737 1.51746 0.90704 1.19403 0.96673 0.89562 0.97880 1.21705 0.85154 1.03991 1.04331 1.22118 0.91634 0.81467 0.74572 1.90678 1.70253 1.31004 1.49493 1.45554 0.92768 1.11566 1.78038 1.43140 0.95952 1.05253 1.78235 1.19992 0.89441 0.88188 0.92011 1.21652 0.92153 1.00164 1.05659 1.21937 1.02216 0.89967 0.94425 1.23095 0.92452 0.89005 1.07896 1.98407 1.78787 1.24751 1.96875 1.72624 1.07493 1.16566 1.05504 1.73071 1.29075 0.92643 1.19892 0.92617 0.95642 0.96085 0.88722 0.88688 0.72442 0.71040 0.82245 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.07 3.33 -27.89 -0.09 -0.02 16 10 C -0.11 -1.98 5.64 -27.88 -0.16 -2.14 16 11 C 0.51 8.56 7.95 -10.98 -0.09 8.47 16 12 O -0.54 -10.73 15.82 5.56 0.09 -10.64 16 13 N -0.53 -7.00 6.29 31.22 0.20 -6.81 16 14 N -0.50 -5.67 6.43 31.23 0.20 -5.47 16 15 C 0.35 3.64 7.68 -154.73 -1.19 2.45 16 16 C -0.16 -1.15 10.06 -39.01 -0.39 -1.54 16 17 C -0.06 -0.38 9.99 -39.21 -0.39 -0.77 16 18 C 0.05 0.50 7.37 -17.27 -0.13 0.37 16 19 Cl -0.02 -0.13 29.13 -51.86 -1.51 -1.64 16 20 N -0.18 -2.19 11.48 32.90 0.38 -1.81 16 21 N -0.29 -3.66 10.55 31.24 0.33 -3.33 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.63 7.16 -51.93 -0.37 0.25 16 24 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 27 H 0.43 5.15 7.98 -182.60 -1.46 3.69 16 28 H 0.44 4.58 8.01 -182.59 -1.46 3.12 16 29 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 30 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 288.40 15.07 4.35 4.35 Total: -1.00 -33.75 288.40 -7.69 -41.44 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.96 Total: -0.53 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.87 Total: -6.19 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 1.88 Total: -44.08 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.75 -7.69 -41.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812514841.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.215 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds