Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47123 * 270.00044 * 3 2 1 5 5 H 1.48503 * 109.46941 * 29.99774 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00013 * 3 2 1 7 7 C 1.37872 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00130 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00279 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47376 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47203 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99788 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99777 * 180.02562 * 11 10 9 14 14 N 1.40098 * 119.99546 * 180.02562 * 13 11 10 15 15 C 1.39114 * 120.00074 * 180.02562 * 14 13 11 16 16 C 1.39492 * 120.14587 * 179.97438 * 15 14 13 17 17 C 1.38525 * 117.91562 * 179.97438 * 16 15 14 18 18 C 1.38955 * 118.02365 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 120.00627 * 179.97438 * 18 17 16 20 20 N 1.31873 * 119.98694 * 0.02562 * 18 17 16 21 21 N 1.28344 * 122.26547 * 0.02562 * 20 18 17 22 22 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47076 * 59.99998 * 9 7 2 24 24 H 1.09001 * 109.46888 * 299.99966 * 9 7 2 25 25 H 1.09002 * 109.46848 * 60.00069 * 10 9 7 26 26 H 1.09001 * 109.47257 * 299.99952 * 10 9 7 27 27 H 0.96998 * 120.00286 * 359.97438 * 13 11 10 28 28 H 0.97006 * 120.00490 * 359.97438 * 14 13 11 29 29 H 1.08001 * 121.04667 * 359.95308 * 16 15 14 30 30 H 1.08000 * 120.98829 * 179.73068 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0036 13 7 6.2024 -3.8037 -0.0028 14 7 7.6034 -3.8037 -0.0034 15 6 8.2990 -5.0084 -0.0046 16 6 9.6940 -5.0119 -0.0058 17 6 10.3394 -6.2375 -0.0064 18 6 9.5583 -7.3867 -0.0053 19 17 10.3136 -8.9498 -0.0066 20 7 8.2432 -7.2898 -0.0042 21 7 7.6397 -6.1571 -0.0046 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6800 -0.8912 25 1 3.6578 -3.1505 -0.8908 26 1 3.6586 -3.1502 0.8893 27 1 5.7175 -4.6438 -0.0021 28 1 8.0885 -2.9636 -0.0038 29 1 10.2533 -4.0880 -0.0065 30 1 11.4177 -6.2981 -0.0116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812514841.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = 24.355306 kcal Electronic energy + Delta-G solvation = -17051.057791 eV Core-core repulsion = 13908.175480 eV Total energy + Delta-G solvation = -3142.882312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.18854 -40.86901 -38.01068 -37.38954 -35.55663 -34.52039 -33.74598 -33.15052 -30.57193 -27.90778 -25.90482 -24.82443 -23.36608 -21.68138 -19.86206 -19.42029 -18.67080 -18.17169 -17.79166 -16.92356 -16.90247 -16.40046 -16.21220 -15.20759 -15.09668 -14.73741 -14.63918 -14.52759 -13.87635 -13.41978 -12.93385 -12.77803 -12.68799 -12.46774 -12.16121 -11.97969 -11.76499 -11.40454 -11.39702 -11.12523 -10.86053 -10.76320 -10.74159 -8.87395 -8.29802 -6.33370 -0.31170 -0.17018 0.55833 0.81430 1.35601 1.37718 1.48948 1.51542 2.36292 2.37056 2.55851 3.06070 3.29801 3.45816 3.64605 3.76144 3.94268 4.33649 4.44074 4.46168 4.69704 4.83024 4.95646 5.34123 5.43724 5.44248 5.62150 6.00466 6.24717 6.43893 6.74011 7.13704 7.31919 7.53887 8.85855 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.059478 B = 0.002889 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.645557 B = 9690.507362 C =10140.706642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.107 4.107 11 C 0.521 3.479 12 O -0.575 6.575 13 N -0.516 5.516 14 N -0.502 5.502 15 C 0.334 3.666 16 C -0.143 4.143 17 C -0.047 4.047 18 C 0.051 3.949 19 Cl -0.008 7.008 20 N -0.220 5.220 21 N -0.324 5.324 22 H 0.267 0.733 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.440 0.560 28 H 0.449 0.551 29 H 0.199 0.801 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.483 -13.997 -0.015 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.568 4.568 8 H 0.069 0.931 9 C -0.032 4.032 10 C -0.148 4.148 11 C 0.310 3.690 12 O -0.453 6.453 13 N -0.264 5.264 14 N -0.232 5.232 15 C 0.091 3.909 16 C -0.177 4.177 17 C -0.076 4.076 18 C -0.127 4.127 19 Cl 0.020 6.980 20 N -0.062 5.062 21 N -0.177 5.177 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.283 0.717 28 H 0.296 0.704 29 H 0.217 0.783 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 25.149 -14.006 -0.012 28.786 hybrid contribution 0.994 1.190 -0.019 1.550 sum 26.142 -12.816 -0.031 29.115 Atomic orbital electron populations 1.70034 1.07919 1.28106 1.52485 1.25835 0.95496 1.03005 0.94290 0.85794 0.79317 0.79268 0.79112 1.19392 1.20714 1.18075 1.21419 0.91257 0.93760 1.50352 0.93134 1.19239 0.93894 0.93164 0.96904 1.21476 0.86744 1.00637 1.05926 1.21505 0.91009 0.81765 0.74721 1.90662 1.70680 1.32282 1.51636 1.45097 0.94403 1.10683 1.76188 1.43140 0.94425 1.05969 1.79663 1.20254 0.90790 0.87338 0.92548 1.22112 0.90645 1.01945 1.02976 1.22401 1.03983 0.88524 0.92672 1.23472 0.92255 0.90374 1.06568 1.98413 1.78312 1.24503 1.96748 1.72526 1.09149 1.16789 1.07739 1.72930 1.30380 0.93335 1.21103 0.92417 0.96625 0.96751 0.87224 0.87231 0.71659 0.70419 0.78349 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.29 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.94 45.45 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 7 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.01 0.29 3.33 29.85 0.10 0.39 16 10 C -0.11 -3.76 5.64 29.85 0.17 -3.59 16 11 C 0.52 16.87 7.95 87.66 0.70 17.56 16 12 O -0.57 -22.31 15.82 -3.03 -0.05 -22.36 16 13 N -0.52 -13.02 6.29 -173.53 -1.09 -14.12 16 14 N -0.50 -10.51 6.43 -55.11 -0.35 -10.87 16 15 C 0.33 6.33 7.68 133.10 1.02 7.35 16 16 C -0.14 -1.51 10.06 22.64 0.23 -1.28 16 17 C -0.05 -0.46 9.99 22.51 0.22 -0.23 16 18 C 0.05 0.87 7.37 84.86 0.62 1.50 16 19 Cl -0.01 -0.11 29.13 -2.72 -0.08 -0.19 16 20 N -0.22 -5.21 11.48 -49.83 -0.57 -5.78 16 21 N -0.32 -7.82 10.55 -55.07 -0.58 -8.40 16 22 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 23 H 0.02 0.75 7.16 -2.39 -0.02 0.74 16 24 H 0.01 0.68 7.53 -2.39 -0.02 0.67 16 25 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.11 3.50 8.14 -2.39 -0.02 3.49 16 27 H 0.44 10.05 7.98 -213.32 -1.70 8.35 16 28 H 0.45 8.35 8.01 -213.31 -1.71 6.64 16 29 H 0.20 0.49 8.06 -2.91 -0.02 0.46 16 30 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -74.36 288.40 0.97 -73.39 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -2.26 Total: 5.93 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 3.77 Total: -6.65 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -2.30 Total: -97.45 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -74.36 0.97 -73.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812514841.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.741 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds