Wall clock time and date at job start Mon Mar 30 2020 01:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48497 * 109.46623 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99921 * 3 2 1 6 6 H 1.48490 * 109.47068 * 60.00183 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38605 * 119.99605 * 180.27784 * 14 13 11 16 16 N 1.32957 * 120.54012 * 359.72472 * 15 14 13 17 17 C 1.31764 * 120.69967 * 179.97438 * 16 15 14 18 18 N 1.31770 * 121.86066 * 0.02562 * 17 16 15 19 19 C 1.32565 * 121.01520 * 359.97438 * 18 17 16 20 20 C 1.38201 * 119.18404 * 359.73978 * 19 18 17 21 21 Cl 1.73597 * 120.84292 * 180.25733 * 20 19 18 22 22 H 0.97004 * 120.00751 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 24 24 H 1.08998 * 109.47585 * 299.99945 * 9 7 2 25 25 H 1.09000 * 109.46887 * 59.99628 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 27 27 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 28 28 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 29 29 H 1.08003 * 119.07222 * 179.97438 * 17 16 15 30 30 H 1.07998 * 120.40319 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2792 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0041 14 7 1.4654 -7.3477 -0.0053 15 6 2.1586 -8.5480 -0.0012 16 7 3.4881 -8.5604 -0.0017 17 6 4.1502 -9.6996 0.0027 18 7 3.5321 -10.8633 0.0072 19 6 2.2083 -10.9336 0.0080 20 6 1.4714 -9.7645 0.0096 21 17 -0.2641 -9.8063 0.0173 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6248 -2.5572 0.8896 25 1 2.8727 -3.6046 0.8877 26 1 2.8714 -3.6038 -0.8923 27 1 3.1359 -6.1343 -0.0046 28 1 0.4954 -7.3477 -0.0045 29 1 5.2300 -9.6790 0.0018 30 1 1.7119 -11.8927 0.0122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812555021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:57 Heat of formation + Delta-G solvation = 33.790077 kcal Electronic energy + Delta-G solvation = -17239.607445 eV Core-core repulsion = 14097.134255 eV Total energy + Delta-G solvation = -3142.473189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32863 -39.51666 -37.10205 -36.54469 -33.59552 -33.56959 -32.53175 -31.19095 -29.52485 -25.85866 -24.73768 -23.89482 -22.01453 -20.42867 -18.84877 -18.36425 -17.01091 -16.50226 -16.41577 -15.78576 -15.76998 -15.05024 -14.97528 -14.48422 -13.96753 -13.57677 -13.13516 -12.55644 -12.27795 -12.22580 -11.75122 -11.50849 -11.29135 -11.00368 -10.69508 -10.64634 -10.09441 -9.86535 -9.70463 -9.65931 -9.46348 -9.16823 -8.39862 -7.93517 -6.03101 -4.08116 0.48197 0.85667 1.63034 1.73249 2.91147 3.29186 3.36360 3.38857 3.40928 3.42161 3.87112 4.03154 4.39427 4.46830 4.80820 5.10778 5.29359 5.32443 5.84778 6.04018 6.04032 6.20719 6.55798 6.73441 7.14531 7.54597 7.65956 7.73173 7.79692 7.97198 8.27556 8.49198 8.99643 9.56162 11.07788 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038873 B = 0.003342 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.113973 B = 8375.241264 C = 9074.887260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.116 4.116 11 C 0.511 3.489 12 O -0.530 6.530 13 N -0.531 5.531 14 N -0.491 5.491 15 C 0.452 3.548 16 N -0.571 5.571 17 C 0.351 3.649 18 N -0.556 5.556 19 C 0.201 3.799 20 C -0.215 4.215 21 Cl -0.042 7.042 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.432 0.568 28 H 0.446 0.554 29 H 0.205 0.795 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -21.718 0.011 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.158 4.158 11 C 0.300 3.700 12 O -0.403 6.403 13 N -0.282 5.282 14 N -0.216 5.216 15 C 0.205 3.795 16 N -0.298 5.298 17 C 0.062 3.938 18 N -0.276 5.276 19 C 0.039 3.961 20 C -0.254 4.254 21 Cl -0.014 7.014 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.274 0.726 28 H 0.293 0.707 29 H 0.221 0.779 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.099 -21.313 0.007 22.169 hybrid contribution -0.567 0.860 0.002 1.030 sum 5.532 -20.453 0.009 21.188 Atomic orbital electron populations 1.70001 1.06089 1.26640 1.49992 1.25024 0.94843 0.99334 0.95155 0.86503 0.80010 0.83648 0.77622 1.19666 1.20987 1.20984 1.21207 0.93054 0.90730 1.51692 0.92327 1.18959 0.93113 0.89093 0.98924 1.21914 1.00914 0.89531 1.03429 1.22223 0.89226 0.83893 0.74668 1.90709 1.14189 1.86800 1.48626 1.45658 1.08908 0.95112 1.78508 1.43458 1.07585 0.94781 1.75788 1.18116 0.88926 0.84135 0.88372 1.68014 1.04881 1.32888 1.24004 1.24822 1.01043 0.81450 0.86523 1.68579 1.09102 1.29434 1.20472 1.22953 0.89148 0.96803 0.87233 1.21884 0.87541 0.95042 1.20980 1.98390 1.07220 1.98446 1.97372 0.92908 0.95579 0.95573 0.89343 0.89344 0.72621 0.70740 0.77905 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.12 -2.20 5.64 -27.88 -0.16 -2.35 16 11 C 0.51 9.31 7.95 -10.99 -0.09 9.22 16 12 O -0.53 -11.75 15.82 5.56 0.09 -11.66 16 13 N -0.53 -7.65 6.29 31.22 0.20 -7.45 16 14 N -0.49 -6.72 6.38 31.26 0.20 -6.52 16 15 C 0.45 5.43 7.64 -154.71 -1.18 4.25 16 16 N -0.57 -6.35 9.51 -13.78 -0.13 -6.49 16 17 C 0.35 3.16 12.28 -92.20 -1.13 2.03 16 18 N -0.56 -5.29 10.43 -14.64 -0.15 -5.44 16 19 C 0.20 1.77 11.11 -17.25 -0.19 1.58 16 20 C -0.22 -2.22 6.38 -39.04 -0.25 -2.46 16 21 Cl -0.04 -0.42 27.78 -51.86 -1.44 -1.86 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.43 5.25 7.99 -182.59 -1.46 3.79 16 28 H 0.45 6.32 6.80 -182.59 -1.24 5.08 16 29 H 0.20 1.09 8.06 -52.48 -0.42 0.66 16 30 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 289.62 15.07 4.36 4.36 Total: -1.00 -32.96 289.62 -9.46 -42.43 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.77 Total: 2.65 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.53 Total: -0.14 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.85 Total: -51.95 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.44 Total: -1.86 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.96 -9.46 -42.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812555021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.218 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds