Wall clock time and date at job start Mon Mar 30 2020 01:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48497 * 109.46623 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99921 * 3 2 1 6 6 H 1.48490 * 109.47068 * 60.00183 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38605 * 119.99605 * 180.27784 * 14 13 11 16 16 N 1.32957 * 120.54012 * 359.72472 * 15 14 13 17 17 C 1.31764 * 120.69967 * 179.97438 * 16 15 14 18 18 N 1.31770 * 121.86066 * 0.02562 * 17 16 15 19 19 C 1.32565 * 121.01520 * 359.97438 * 18 17 16 20 20 C 1.38201 * 119.18404 * 359.73978 * 19 18 17 21 21 Cl 1.73597 * 120.84292 * 180.25733 * 20 19 18 22 22 H 0.97004 * 120.00751 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 24 24 H 1.08998 * 109.47585 * 299.99945 * 9 7 2 25 25 H 1.09000 * 109.46887 * 59.99628 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 27 27 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 28 28 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 29 29 H 1.08003 * 119.07222 * 179.97438 * 17 16 15 30 30 H 1.07998 * 120.40319 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2792 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0041 14 7 1.4654 -7.3477 -0.0053 15 6 2.1586 -8.5480 -0.0012 16 7 3.4881 -8.5604 -0.0017 17 6 4.1502 -9.6996 0.0027 18 7 3.5321 -10.8633 0.0072 19 6 2.2083 -10.9336 0.0080 20 6 1.4714 -9.7645 0.0096 21 17 -0.2641 -9.8063 0.0173 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6248 -2.5572 0.8896 25 1 2.8727 -3.6046 0.8877 26 1 2.8714 -3.6038 -0.8923 27 1 3.1359 -6.1343 -0.0046 28 1 0.4954 -7.3477 -0.0045 29 1 5.2300 -9.6790 0.0018 30 1 1.7119 -11.8927 0.0122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812555021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:57 Heat of formation + Delta-G solvation = 11.590666 kcal Electronic energy + Delta-G solvation = -17240.570083 eV Core-core repulsion = 14097.134255 eV Total energy + Delta-G solvation = -3143.435828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.15862 -40.88884 -37.95653 -37.61469 -35.59000 -34.54864 -33.59215 -32.87130 -30.66675 -27.67430 -25.57371 -24.89939 -23.68052 -21.84791 -19.90769 -19.46005 -18.63411 -17.72481 -17.27948 -17.10584 -16.89679 -16.46926 -16.25102 -15.91879 -15.16743 -14.63776 -14.56533 -14.24217 -13.58338 -13.31869 -13.27249 -12.84969 -12.53000 -12.45610 -12.29260 -11.95538 -11.67877 -11.66404 -11.31811 -11.10755 -10.62226 -10.55672 -10.39288 -8.99684 -8.17775 -6.31150 -0.26500 0.01931 0.58841 0.89607 1.44664 1.45031 1.48998 1.58516 2.40354 2.48044 2.64829 3.15873 3.16307 3.29097 3.47236 3.84134 4.10557 4.43684 4.51683 4.52003 4.95004 5.09165 5.32532 5.50793 5.61656 5.61930 5.85088 6.05224 6.17286 6.39019 6.87085 6.98190 7.18162 7.39238 8.94968 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038873 B = 0.003342 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.113973 B = 8375.241264 C = 9074.887260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.105 4.105 11 C 0.515 3.485 12 O -0.580 6.580 13 N -0.510 5.510 14 N -0.505 5.505 15 C 0.438 3.562 16 N -0.582 5.582 17 C 0.350 3.650 18 N -0.559 5.559 19 C 0.209 3.791 20 C -0.220 4.220 21 Cl -0.042 7.042 22 H 0.262 0.738 23 H -0.013 1.013 24 H -0.013 1.013 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.444 0.556 28 H 0.441 0.559 29 H 0.239 0.761 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 -22.855 0.013 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.098 0.902 9 C 0.003 3.997 10 C -0.146 4.146 11 C 0.304 3.696 12 O -0.457 6.457 13 N -0.259 5.259 14 N -0.232 5.232 15 C 0.192 3.808 16 N -0.308 5.308 17 C 0.062 3.938 18 N -0.278 5.278 19 C 0.046 3.954 20 C -0.258 4.258 21 Cl -0.014 7.014 22 H 0.071 0.929 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.289 0.711 28 H 0.287 0.713 29 H 0.255 0.745 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.923 -22.521 0.010 24.224 hybrid contribution -1.372 1.009 0.002 1.703 sum 7.551 -21.512 0.011 22.799 Atomic orbital electron populations 1.70174 1.08270 1.27724 1.51583 1.26105 0.95692 1.03884 0.94730 0.85288 0.79427 0.78222 0.77399 1.17469 1.20841 1.20832 1.21726 0.94167 0.91349 1.50556 0.90249 1.18736 0.93708 0.92075 0.95199 1.21636 0.99380 0.87551 1.06025 1.21881 0.88357 0.84839 0.74529 1.90694 1.16164 1.87519 1.51320 1.45120 1.09225 0.95065 1.76536 1.43486 1.07442 0.94577 1.77701 1.18329 0.89615 0.83859 0.88951 1.68057 1.04468 1.34012 1.24274 1.25572 1.02447 0.80688 0.85097 1.68685 1.09366 1.29608 1.20143 1.23475 0.88973 0.97435 0.85503 1.22003 0.87758 0.94920 1.21162 1.98395 1.07157 1.98415 1.97391 0.92906 0.99499 0.99492 0.86644 0.86649 0.71099 0.71294 0.74479 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 2 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.59 9.11 25.60 0.23 -29.36 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.16 4.26 29.85 0.13 2.29 16 10 C -0.10 -3.90 5.64 29.85 0.17 -3.73 16 11 C 0.52 18.91 7.95 87.66 0.70 19.61 16 12 O -0.58 -26.83 15.82 -3.01 -0.05 -26.88 16 13 N -0.51 -14.27 6.29 -173.54 -1.09 -15.37 16 14 N -0.51 -13.62 6.38 -55.00 -0.35 -13.97 16 15 C 0.44 9.95 7.64 133.18 1.02 10.97 16 16 N -0.58 -11.69 9.51 -197.51 -1.88 -13.57 16 17 C 0.35 5.30 12.28 180.90 2.22 7.52 16 18 N -0.56 -9.00 10.43 -200.24 -2.09 -11.09 16 19 C 0.21 3.14 11.11 84.57 0.94 4.08 16 20 C -0.22 -4.19 6.38 22.62 0.14 -4.04 16 21 Cl -0.04 -0.79 27.78 -2.72 -0.08 -0.87 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.81 8.10 -2.39 -0.02 -0.83 16 24 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 25 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 26 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 27 H 0.44 9.99 7.99 -213.31 -1.70 8.28 16 28 H 0.44 12.73 6.80 -213.31 -1.45 11.28 16 29 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -73.88 289.62 0.84 -73.05 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -1.95 Total: 13.92 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.01 Total: 7.42 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -5.13 Total: -112.03 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -73.88 0.84 -73.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812555021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.637 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds