Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47177 * 240.00227 * 3 2 1 5 5 H 1.48497 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46667 * 120.00389 * 3 2 1 7 7 C 1.37870 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00551 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47374 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99824 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00296 * 180.02562 * 11 10 9 14 14 C 1.45192 * 117.00180 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.38341 * 119.98433 * 359.97438 * 15 14 13 17 17 N 1.32153 * 120.02175 * 180.02562 * 16 15 14 18 18 C 1.32243 * 119.97780 * 359.97438 * 17 16 15 19 19 Cl 1.73606 * 120.01273 * 179.97438 * 18 17 16 20 20 C 1.38516 * 119.96926 * 0.02562 * 18 17 16 21 21 N 1.32111 * 119.98178 * 0.02562 * 20 18 17 22 22 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46442 * 60.00464 * 9 7 2 24 24 H 1.09000 * 109.47224 * 300.00824 * 9 7 2 25 25 H 1.09000 * 109.46989 * 59.99924 * 10 9 7 26 26 H 1.09000 * 109.47370 * 300.00467 * 10 9 7 27 27 H 1.09002 * 109.46862 * 59.99878 * 14 13 11 28 28 H 1.09002 * 109.47594 * 300.00615 * 14 13 11 29 29 H 1.08001 * 119.99272 * 0.02761 * 16 15 14 30 30 H 1.08002 * 120.00907 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2837 -4.9672 -0.0011 13 8 2.1631 -6.1296 -0.0008 14 6 1.3723 -7.3473 -0.0008 15 6 2.2904 -8.5424 -0.0010 16 6 3.6618 -8.3608 -0.0015 17 7 4.4675 -9.4083 -0.0022 18 6 3.9624 -10.6304 -0.0017 19 17 5.0200 -12.0071 -0.0033 20 6 2.5891 -10.8116 -0.0012 21 7 1.7850 -9.7634 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.7438 -7.3723 -0.8910 28 1 0.7431 -7.3721 0.8889 29 1 4.0742 -7.3626 -0.0014 30 1 2.1759 -11.8094 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614498.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -53.887284 kcal Electronic energy + Delta-G solvation = -17023.595909 eV Core-core repulsion = 13845.027993 eV Total energy + Delta-G solvation = -3178.567916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63774 -40.10463 -37.30669 -36.48576 -34.86165 -33.65968 -32.57210 -31.18934 -28.00788 -25.92546 -25.28377 -23.35176 -22.12004 -20.02719 -18.32125 -17.81805 -17.23003 -16.89078 -16.65461 -16.07360 -15.53176 -15.32109 -14.51104 -14.24023 -14.03637 -13.19189 -12.80538 -12.50237 -12.29533 -12.23312 -12.18047 -11.85096 -11.55558 -11.29583 -10.98260 -10.78855 -10.70846 -10.11940 -10.08915 -9.66986 -9.62838 -9.45350 -9.25036 -8.41906 -6.05835 -4.11253 0.12074 0.54622 1.21046 2.51769 2.64781 3.05890 3.30343 3.35386 3.36948 3.70396 3.88757 3.92572 4.35946 4.40973 4.60173 5.04530 5.06629 5.09550 5.29755 5.48887 5.69867 6.01986 6.08295 6.43882 6.61537 6.77999 7.13244 7.60281 7.66073 7.92313 8.10250 8.29938 8.95514 9.53281 11.05048 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050211 B = 0.002810 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.517023 B = 9962.930148 C =10494.699682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.462 3.538 12 O -0.498 6.498 13 O -0.368 6.368 14 C 0.119 3.881 15 C 0.084 3.916 16 C 0.096 3.904 17 N -0.429 5.429 18 C 0.115 3.885 19 Cl -0.014 7.014 20 C 0.079 3.921 21 N -0.417 5.417 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.193 0.807 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -22.187 -0.001 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.306 3.694 12 O -0.383 6.383 13 O -0.287 6.287 14 C 0.044 3.956 15 C -0.056 4.056 16 C -0.064 4.064 17 N -0.145 5.145 18 C -0.052 4.052 19 Cl 0.014 6.986 20 C -0.082 4.082 21 N -0.133 5.133 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.210 0.790 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.012 -22.207 -0.003 23.288 hybrid contribution 0.451 0.607 0.001 0.756 sum 7.463 -21.600 -0.002 22.853 Atomic orbital electron populations 1.69977 1.06105 1.26966 1.49687 1.25015 0.94860 0.99359 0.95038 0.86596 0.79517 0.82853 0.78672 1.20133 1.21244 1.20137 1.21099 0.93052 0.90581 1.52144 0.92297 1.19038 0.93221 0.89216 0.98998 1.21821 1.00763 0.87062 1.04278 1.24874 0.88048 0.84956 0.71564 1.90672 1.15772 1.87296 1.44554 1.86445 1.42054 1.14686 1.85487 1.21214 0.90653 0.78691 1.05046 1.21964 0.94170 0.93209 0.96302 1.23770 0.90115 0.98711 0.93771 1.67941 1.39753 0.97914 1.08905 1.22927 0.90458 0.90526 1.01263 1.98431 1.66784 1.37065 1.96277 1.23562 0.88384 0.99522 0.96723 1.68162 1.38252 0.98123 1.08796 0.92728 0.95505 0.95512 0.88649 0.88660 0.88217 0.88207 0.78981 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.81 4.26 -27.88 -0.12 0.70 16 10 C -0.10 -1.90 5.75 -27.89 -0.16 -2.06 16 11 C 0.46 8.12 7.96 36.00 0.29 8.41 16 12 O -0.50 -10.41 15.73 -18.75 -0.29 -10.70 16 13 O -0.37 -5.09 8.69 -39.26 -0.34 -5.43 16 14 C 0.12 1.44 6.02 36.00 0.22 1.65 16 15 C 0.08 0.94 6.78 -82.42 -0.56 0.38 16 16 C 0.10 1.05 10.56 -17.38 -0.18 0.87 16 17 N -0.43 -4.91 10.49 -10.17 -0.11 -5.02 16 18 C 0.12 1.13 7.29 -17.27 -0.13 1.01 16 19 Cl -0.01 -0.11 29.13 -51.86 -1.51 -1.62 16 20 C 0.08 0.70 11.01 -17.33 -0.19 0.51 16 21 N -0.42 -4.51 10.42 -9.26 -0.10 -4.61 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 27 H 0.10 1.19 8.13 -51.93 -0.42 0.76 16 28 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.19 1.87 6.99 -52.49 -0.37 1.51 16 30 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 292.65 15.07 4.41 4.41 Total: -1.00 -31.41 292.65 -6.33 -37.74 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -2.86 Total: -3.42 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.25 Total: -1.62 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.53 Total: -35.34 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.64 Total: -16.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.41 -6.33 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614498.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.145 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds