Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47177 * 240.00227 * 3 2 1 5 5 H 1.48497 * 109.47041 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46667 * 120.00389 * 3 2 1 7 7 C 1.37870 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00551 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47374 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99824 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00296 * 180.02562 * 11 10 9 14 14 C 1.45192 * 117.00180 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.38341 * 119.98433 * 359.97438 * 15 14 13 17 17 N 1.32153 * 120.02175 * 180.02562 * 16 15 14 18 18 C 1.32243 * 119.97780 * 359.97438 * 17 16 15 19 19 Cl 1.73606 * 120.01273 * 179.97438 * 18 17 16 20 20 C 1.38516 * 119.96926 * 0.02562 * 18 17 16 21 21 N 1.32111 * 119.98178 * 0.02562 * 20 18 17 22 22 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46442 * 60.00464 * 9 7 2 24 24 H 1.09000 * 109.47224 * 300.00824 * 9 7 2 25 25 H 1.09000 * 109.46989 * 59.99924 * 10 9 7 26 26 H 1.09000 * 109.47370 * 300.00467 * 10 9 7 27 27 H 1.09002 * 109.46862 * 59.99878 * 14 13 11 28 28 H 1.09002 * 109.47594 * 300.00615 * 14 13 11 29 29 H 1.08001 * 119.99272 * 0.02761 * 16 15 14 30 30 H 1.08002 * 120.00907 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2837 -4.9672 -0.0011 13 8 2.1631 -6.1296 -0.0008 14 6 1.3723 -7.3473 -0.0008 15 6 2.2904 -8.5424 -0.0010 16 6 3.6618 -8.3608 -0.0015 17 7 4.4675 -9.4083 -0.0022 18 6 3.9624 -10.6304 -0.0017 19 17 5.0200 -12.0071 -0.0033 20 6 2.5891 -10.8116 -0.0012 21 7 1.7850 -9.7634 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.7438 -7.3723 -0.8910 28 1 0.7431 -7.3721 0.8889 29 1 4.0742 -7.3626 -0.0014 30 1 2.1759 -11.8094 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614498.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -74.042368 kcal Electronic energy + Delta-G solvation = -17024.469899 eV Core-core repulsion = 13845.027993 eV Total energy + Delta-G solvation = -3179.441906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.46420 -41.45122 -38.10284 -37.73512 -35.68365 -35.62281 -33.55075 -32.97201 -29.12049 -27.66035 -26.08941 -24.54798 -23.61587 -21.52800 -19.37077 -18.82765 -18.53092 -18.06185 -17.86118 -17.60395 -16.48526 -16.48080 -16.33582 -15.33408 -15.28313 -14.31546 -14.18249 -14.07890 -13.75498 -13.25149 -13.14715 -12.98813 -12.77688 -12.54738 -12.52845 -12.35499 -11.99987 -11.90833 -11.73876 -11.46155 -11.27436 -10.54413 -10.43596 -10.23841 -8.17833 -6.31033 -0.66844 -0.24126 0.48394 1.22541 1.33570 1.46494 1.48949 1.56776 2.26692 2.44310 2.82441 3.07657 3.16451 3.19026 3.51850 3.77440 3.91821 4.08368 4.31558 4.38060 4.51153 4.52220 4.91810 4.94866 5.27923 5.50714 5.59661 5.83487 5.83981 6.15612 6.33912 6.75528 6.88412 7.39326 8.94434 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050211 B = 0.002810 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.517023 B = 9962.930148 C =10494.699682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.036 3.964 10 C -0.093 4.093 11 C 0.474 3.526 12 O -0.538 6.538 13 O -0.350 6.350 14 C 0.121 3.879 15 C 0.077 3.923 16 C 0.091 3.909 17 N -0.447 5.447 18 C 0.111 3.889 19 Cl 0.001 6.999 20 C 0.089 3.911 21 N -0.430 5.430 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.201 0.799 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 -23.119 -0.001 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.001 4.001 10 C -0.130 4.130 11 C 0.319 3.681 12 O -0.426 6.426 13 O -0.267 6.267 14 C 0.046 3.954 15 C -0.062 4.062 16 C -0.068 4.068 17 N -0.164 5.164 18 C -0.056 4.056 19 Cl 0.030 6.970 20 C -0.073 4.073 21 N -0.147 5.147 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.217 0.783 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.076 -23.158 -0.003 24.873 hybrid contribution -0.153 0.707 0.001 0.723 sum 8.923 -22.451 -0.002 24.159 Atomic orbital electron populations 1.70145 1.08181 1.27927 1.51335 1.26064 0.95684 1.03768 0.94655 0.85412 0.78070 0.77559 0.79459 1.18765 1.21549 1.18774 1.21634 0.94173 0.91304 1.50966 0.90317 1.18824 0.93786 0.91931 0.95609 1.21548 0.99303 0.85415 1.06727 1.24495 0.87168 0.85770 0.70637 1.90671 1.17434 1.87969 1.46558 1.86384 1.41297 1.14351 1.84626 1.21296 0.90794 0.78029 1.05286 1.21747 0.94009 0.93065 0.97399 1.23841 0.89919 0.99096 0.93985 1.67947 1.40281 0.98620 1.09556 1.23189 0.91267 0.90505 1.00647 1.98438 1.66427 1.36052 1.96121 1.24091 0.87907 1.00311 0.94952 1.68160 1.38921 0.98346 1.09225 0.92820 0.99053 0.99057 0.86130 0.86141 0.88118 0.88106 0.78273 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.44 0.28 -56.87 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.04 1.84 4.26 29.85 0.13 1.97 16 10 C -0.09 -3.36 5.75 29.85 0.17 -3.19 16 11 C 0.47 16.48 7.96 71.23 0.57 17.05 16 12 O -0.54 -23.00 15.73 21.96 0.35 -22.65 16 13 O -0.35 -9.22 8.69 -51.42 -0.45 -9.67 16 14 C 0.12 2.82 6.02 71.24 0.43 3.25 16 15 C 0.08 1.63 6.78 42.54 0.29 1.92 16 16 C 0.09 1.85 10.56 84.67 0.89 2.75 16 17 N -0.45 -9.55 10.49 -186.09 -1.95 -11.50 16 18 C 0.11 1.97 7.29 84.70 0.62 2.59 16 19 Cl 0.00 0.02 29.13 -2.72 -0.08 -0.06 16 20 C 0.09 1.36 11.01 84.72 0.93 2.30 16 21 N -0.43 -8.59 10.42 -183.21 -1.91 -10.50 16 22 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 23 H -0.01 -0.52 8.10 -2.38 -0.02 -0.54 16 24 H -0.01 -0.52 8.10 -2.39 -0.02 -0.54 16 25 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 26 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.10 2.35 8.13 -2.39 -0.02 2.34 16 28 H 0.10 2.36 8.13 -2.39 -0.02 2.34 16 29 H 0.20 3.58 6.99 -2.91 -0.02 3.56 16 30 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -68.82 292.65 4.16 -64.66 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.17 Total: 1.90 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.72 Total: -0.12 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -3.58 Total: -78.88 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.10 Total: -32.32 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -68.82 4.16 -64.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614498.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.379 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds