Wall clock time and date at job start Mon Mar 30 2020 01:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33854 * 124.52005 * 2 1 4 4 C 1.37409 * 115.11080 * 180.02562 * 3 2 1 5 5 C 1.36748 * 113.29057 * 0.02562 * 4 3 2 6 6 C 1.46391 * 125.46803 * 180.02562 * 5 4 3 7 7 O 1.21633 * 119.99688 * 359.97438 * 6 5 4 8 8 O 1.34898 * 120.00517 * 179.97438 * 6 5 4 9 9 C 1.45196 * 117.00256 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47253 * 180.02562 * 9 8 6 11 11 O 1.42895 * 109.47596 * 64.99907 * 10 9 8 12 12 C 1.42895 * 114.00656 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47664 * 180.02562 * 12 11 10 14 14 H 1.08011 * 119.99718 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00318 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99645 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00010 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47362 * 59.99794 * 17 15 13 19 19 H 1.48502 * 109.47116 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47088 * 299.99662 * 17 15 13 21 21 S 1.70620 * 124.51494 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47103 * 299.98247 * 1 2 3 24 24 H 1.09004 * 109.46903 * 59.97947 * 1 2 3 25 25 H 1.07997 * 122.44383 * 0.02562 * 3 2 1 26 26 H 1.08002 * 123.35482 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47466 * 300.00580 * 9 8 6 28 28 H 1.08999 * 109.46930 * 59.99806 * 9 8 6 29 29 H 1.09002 * 109.47528 * 185.00352 * 10 9 8 30 30 H 1.09003 * 109.46851 * 305.00134 * 10 9 8 31 31 H 1.09004 * 109.47093 * 300.00663 * 12 11 10 32 32 H 1.09001 * 109.46490 * 59.99952 * 12 11 10 33 33 H 0.97003 * 119.99695 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6212 0.8782 -0.0006 5 6 3.9493 -0.4493 -0.0016 6 6 5.3105 -0.9879 -0.0018 7 8 6.2635 -0.2321 -0.0016 8 8 5.5080 -2.3224 -0.0023 9 6 6.8842 -2.7851 -0.0031 10 6 6.9080 -4.3149 -0.0043 11 8 6.3456 -4.7992 -1.2254 12 6 6.3205 -6.2241 -1.3290 13 6 5.7114 -6.6213 -2.6489 14 1 5.3772 -5.8614 -3.3399 15 6 5.5806 -7.9546 -2.9745 16 7 5.9880 -8.8799 -2.1333 17 14 4.8262 -8.4469 -4.6110 18 1 5.6386 -7.8849 -5.7196 19 1 4.7989 -9.9278 -4.7180 20 1 3.4407 -7.9194 -4.6959 21 16 2.4738 -1.4059 -0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 1.8430 2.0967 0.0004 26 1 4.3545 1.6711 -0.0002 27 1 7.3921 -2.4135 -0.8932 28 1 7.3928 -2.4141 0.8867 29 1 7.9372 -4.6624 0.0848 30 1 6.3244 -4.6879 0.8375 31 1 7.3378 -6.6109 -1.2676 32 1 5.7251 -6.6371 -0.5147 33 1 5.8964 -9.8180 -2.3626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:39 Heat of formation + Delta-G solvation = -109.224974 kcal Electronic energy + Delta-G solvation = -17450.558569 eV Core-core repulsion = 14375.175080 eV Total energy + Delta-G solvation = -3075.383489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20307 -38.16723 -36.96225 -35.92725 -32.77986 -32.34874 -30.21402 -27.77688 -26.83408 -24.05469 -22.78627 -22.31906 -21.52750 -19.22420 -18.38989 -16.74436 -16.49334 -16.35376 -16.10417 -15.33856 -14.80120 -14.59107 -14.31644 -14.20993 -13.58982 -13.32775 -13.03543 -12.69376 -12.62573 -12.20929 -12.07054 -11.88252 -11.43765 -10.98178 -10.93002 -10.84262 -10.76072 -10.50342 -10.38543 -10.05478 -9.14222 -8.88401 -8.87433 -8.72757 -8.21371 -6.11818 -4.13549 0.26343 1.32559 1.79047 2.11000 2.72858 2.92835 3.32340 3.34798 3.38917 4.32382 4.50715 4.70780 4.85104 4.91931 5.07953 5.19654 5.22460 5.24750 5.32953 5.46146 5.60550 5.73838 5.85446 5.87965 5.96664 6.09629 6.15193 6.52472 7.05185 7.39663 7.77430 7.79603 8.12525 8.52335 8.98732 9.51196 10.99729 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.004121 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.141176 B = 6793.561325 C = 7890.716667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.205 4.205 3 C -0.165 4.165 4 C -0.045 4.045 5 C -0.266 4.266 6 C 0.538 3.462 7 O -0.509 6.509 8 O -0.338 6.338 9 C 0.076 3.924 10 C 0.061 3.939 11 O -0.391 6.391 12 C 0.195 3.805 13 C -0.516 4.516 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 S 0.274 5.726 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 17.727 7.159 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.325 4.325 3 C -0.196 4.196 4 C -0.079 4.079 5 C -0.385 4.385 6 C 0.383 3.617 7 O -0.400 6.400 8 O -0.254 6.254 9 C 0.003 3.997 10 C -0.016 4.016 11 O -0.311 6.311 12 C 0.120 3.880 13 C -0.554 4.554 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 S 0.543 5.457 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.162 0.838 26 H 0.171 0.829 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.542 16.234 7.032 19.646 hybrid contribution 0.279 1.063 -0.588 1.247 sum -8.263 17.297 6.444 20.224 Atomic orbital electron populations 1.20404 0.87303 1.03424 1.03317 1.24593 1.02052 0.99021 1.06838 1.19843 0.92325 0.99712 1.07681 1.20711 0.96397 0.94555 0.96208 1.23606 0.95539 0.97820 1.21522 1.19633 0.87822 0.81369 0.72899 1.90857 1.42572 1.59630 1.46913 1.86678 1.32793 1.22502 1.83472 1.23261 0.78926 0.94754 1.02759 1.22328 0.98372 0.90374 0.90544 1.87920 1.82374 1.25965 1.34822 1.20234 0.95934 0.74255 0.97531 1.21014 1.40385 0.91963 1.02025 0.91552 1.24938 0.95651 0.95983 0.97834 1.69953 1.47166 1.00671 1.36033 0.86388 0.79800 0.77133 0.83125 1.20001 1.21132 1.19967 1.83726 0.92353 1.04907 1.64712 0.91019 0.90220 0.90157 0.83817 0.82950 0.90284 0.90220 0.91767 0.93138 0.97604 0.97471 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.33 36.01 0.37 -0.20 16 2 C -0.20 -1.98 6.28 -35.85 -0.23 -2.21 16 3 C -0.17 -1.58 9.99 -41.42 -0.41 -2.00 16 4 C -0.05 -0.52 10.01 -40.42 -0.40 -0.93 16 5 C -0.27 -3.73 6.45 -36.84 -0.24 -3.96 16 6 C 0.54 8.94 7.92 34.01 0.27 9.21 16 7 O -0.51 -9.12 16.64 -19.37 -0.32 -9.44 16 8 O -0.34 -6.01 10.05 -43.82 -0.44 -6.45 16 9 C 0.08 1.26 5.86 37.16 0.22 1.47 16 10 C 0.06 1.14 6.33 37.16 0.24 1.37 16 11 O -0.39 -9.58 10.30 -38.80 -0.40 -9.97 16 12 C 0.19 5.35 5.69 36.00 0.20 5.55 16 13 C -0.52 -15.27 9.43 -34.44 -0.32 -15.60 16 14 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 17 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 S 0.27 3.33 22.85 -107.50 -2.46 0.87 16 22 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -33.32 313.21 -7.78 -41.10 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -4.19 Total: -5.84 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.40 Total: -5.72 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.16 Total: -25.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.46 Total: 0.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.32 -7.78 -41.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.124 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds