Wall clock time and date at job start Mon Mar 30 2020 01:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33854 * 124.52005 * 2 1 4 4 C 1.37409 * 115.11080 * 180.02562 * 3 2 1 5 5 C 1.36748 * 113.29057 * 0.02562 * 4 3 2 6 6 C 1.46391 * 125.46803 * 180.02562 * 5 4 3 7 7 O 1.21633 * 119.99688 * 359.97438 * 6 5 4 8 8 O 1.34898 * 120.00517 * 179.97438 * 6 5 4 9 9 C 1.45196 * 117.00256 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47253 * 180.02562 * 9 8 6 11 11 O 1.42895 * 109.47596 * 64.99907 * 10 9 8 12 12 C 1.42895 * 114.00656 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47664 * 180.02562 * 12 11 10 14 14 H 1.08011 * 119.99718 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00318 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99645 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00010 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47362 * 59.99794 * 17 15 13 19 19 H 1.48502 * 109.47116 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47088 * 299.99662 * 17 15 13 21 21 S 1.70620 * 124.51494 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47103 * 299.98247 * 1 2 3 24 24 H 1.09004 * 109.46903 * 59.97947 * 1 2 3 25 25 H 1.07997 * 122.44383 * 0.02562 * 3 2 1 26 26 H 1.08002 * 123.35482 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47466 * 300.00580 * 9 8 6 28 28 H 1.08999 * 109.46930 * 59.99806 * 9 8 6 29 29 H 1.09002 * 109.47528 * 185.00352 * 10 9 8 30 30 H 1.09003 * 109.46851 * 305.00134 * 10 9 8 31 31 H 1.09004 * 109.47093 * 300.00663 * 12 11 10 32 32 H 1.09001 * 109.46490 * 59.99952 * 12 11 10 33 33 H 0.97003 * 119.99695 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6212 0.8782 -0.0006 5 6 3.9493 -0.4493 -0.0016 6 6 5.3105 -0.9879 -0.0018 7 8 6.2635 -0.2321 -0.0016 8 8 5.5080 -2.3224 -0.0023 9 6 6.8842 -2.7851 -0.0031 10 6 6.9080 -4.3149 -0.0043 11 8 6.3456 -4.7992 -1.2254 12 6 6.3205 -6.2241 -1.3290 13 6 5.7114 -6.6213 -2.6489 14 1 5.3772 -5.8614 -3.3399 15 6 5.5806 -7.9546 -2.9745 16 7 5.9880 -8.8799 -2.1333 17 14 4.8262 -8.4469 -4.6110 18 1 5.6386 -7.8849 -5.7196 19 1 4.7989 -9.9278 -4.7180 20 1 3.4407 -7.9194 -4.6959 21 16 2.4738 -1.4059 -0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 1.8430 2.0967 0.0004 26 1 4.3545 1.6711 -0.0002 27 1 7.3921 -2.4135 -0.8932 28 1 7.3928 -2.4141 0.8867 29 1 7.9372 -4.6624 0.0848 30 1 6.3244 -4.6879 0.8375 31 1 7.3378 -6.6109 -1.2676 32 1 5.7251 -6.6371 -0.5147 33 1 5.8964 -9.8180 -2.3626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:39 Heat of formation + Delta-G solvation = -129.498268 kcal Electronic energy + Delta-G solvation = -17451.437685 eV Core-core repulsion = 14375.175080 eV Total energy + Delta-G solvation = -3076.262605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47621 -39.14542 -38.61434 -37.36696 -34.95591 -33.16645 -31.73153 -29.21947 -28.41481 -25.00049 -24.54815 -23.87561 -22.80494 -20.23969 -19.48370 -18.68332 -17.97208 -17.82178 -17.11201 -17.02936 -16.41456 -16.29489 -15.67702 -15.03878 -15.00136 -14.40350 -14.22637 -14.01515 -13.80564 -13.39028 -13.25218 -13.02037 -12.91297 -12.78323 -12.68600 -12.46642 -12.05048 -11.83435 -11.80299 -11.71583 -11.30819 -10.90397 -10.29030 -9.75576 -9.63962 -8.32681 -6.45107 -0.68626 0.40981 0.91812 1.15079 1.40139 1.44755 1.53172 1.53296 1.86232 2.34239 3.01267 3.03321 3.64555 3.83216 3.88415 4.06734 4.20807 4.31522 4.37333 4.47439 4.61048 4.65605 4.75995 4.83747 5.00086 5.06006 5.11803 5.16448 5.26918 5.38398 5.53326 5.94154 6.47272 6.53865 6.78017 7.26465 8.79384 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.004121 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.141176 B = 6793.561325 C = 7890.716667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.179 4.179 3 C -0.169 4.169 4 C -0.029 4.029 5 C -0.308 4.308 6 C 0.537 3.463 7 O -0.532 6.532 8 O -0.357 6.357 9 C 0.079 3.921 10 C 0.054 3.946 11 O -0.410 6.410 12 C 0.208 3.792 13 C -0.553 4.553 14 H 0.059 0.941 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.981 3.019 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.265 1.265 21 S 0.234 5.766 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.179 0.821 26 H 0.162 0.838 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.057 0.943 31 H -0.007 1.007 32 H -0.010 1.010 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 18.974 6.670 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.300 4.300 3 C -0.198 4.198 4 C -0.063 4.063 5 C -0.426 4.426 6 C 0.384 3.616 7 O -0.425 6.425 8 O -0.273 6.273 9 C 0.006 3.994 10 C -0.022 4.022 11 O -0.330 6.330 12 C 0.133 3.867 13 C -0.590 4.590 14 H 0.077 0.923 15 C -0.189 4.189 16 N -0.568 5.568 17 Si 0.804 3.196 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.190 1.190 21 S 0.503 5.497 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.196 0.804 26 H 0.180 0.820 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.241 17.495 6.562 21.308 hybrid contribution 0.752 0.778 -0.351 1.137 sum -9.489 18.273 6.211 21.506 Atomic orbital electron populations 1.20600 0.84754 1.04260 1.05117 1.25018 1.03434 0.97449 1.04076 1.20161 0.91243 1.01232 1.07144 1.21048 0.97773 0.93750 0.93752 1.23562 0.94665 0.98943 1.25403 1.20033 0.88831 0.80647 0.72113 1.90823 1.43493 1.59717 1.48470 1.86670 1.33272 1.23597 1.83794 1.23272 0.79002 0.93104 1.04053 1.22650 0.99355 0.91805 0.88436 1.87865 1.83192 1.24060 1.37931 1.19876 0.94526 0.75899 0.96359 1.21353 1.41896 0.92715 1.03041 0.92256 1.25922 0.95509 0.95544 1.01938 1.70052 1.47451 1.01258 1.38026 0.85261 0.79104 0.77308 0.77925 1.19116 1.19767 1.19000 1.83833 0.92843 1.07003 1.65994 0.90788 0.88049 0.88365 0.80377 0.82027 0.90814 0.87038 0.89599 0.92492 0.98943 0.99219 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.33 71.24 0.74 -0.15 16 2 C -0.18 -3.06 6.28 24.69 0.16 -2.90 16 3 C -0.17 -2.75 9.99 21.08 0.21 -2.54 16 4 C -0.03 -0.63 10.01 21.72 0.22 -0.41 16 5 C -0.31 -8.64 6.45 24.04 0.16 -8.49 16 6 C 0.54 18.25 7.92 69.94 0.55 18.80 16 7 O -0.53 -19.35 16.64 19.40 0.32 -19.03 16 8 O -0.36 -13.01 10.05 -55.46 -0.56 -13.57 16 9 C 0.08 2.61 5.86 71.98 0.42 3.03 16 10 C 0.05 2.03 6.33 71.98 0.46 2.49 16 11 O -0.41 -20.68 10.30 -145.57 -1.50 -22.18 16 12 C 0.21 11.82 5.69 71.23 0.41 12.22 16 13 C -0.55 -33.39 9.43 25.60 0.24 -33.15 16 14 H 0.06 3.57 7.81 -2.90 -0.02 3.55 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 17 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 S 0.23 5.69 22.85 -56.49 -1.29 4.40 16 22 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 23 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -72.73 313.21 4.41 -68.33 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.11 Total: 1.09 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.01 Total: -10.08 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.28 Total: -55.49 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -1.73 Total: -54.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.29 Total: 4.40 kcal Total: -72.73 4.41 -68.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.172 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds