Wall clock time and date at job start Mon Mar 30 2020 01:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37410 * 123.35307 * 2 1 4 4 C 1.33864 * 115.10690 * 179.77040 * 3 2 1 5 5 S 1.70622 * 110.96126 * 0.48570 * 4 3 2 6 6 C 1.36753 * 123.35185 * 180.29713 * 2 1 3 7 7 C 1.46385 * 125.46735 * 0.03354 * 6 2 1 8 8 O 1.21632 * 120.00013 * 359.97438 * 7 6 2 9 9 O 1.34898 * 119.99943 * 180.02562 * 7 6 2 10 10 C 1.45201 * 116.99821 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47316 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47206 * 65.00058 * 11 10 9 13 13 C 1.42897 * 114.00166 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47009 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00060 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99935 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99818 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47068 * 60.00512 * 18 16 14 20 20 H 1.48501 * 109.46978 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47103 * 300.00188 * 18 16 14 22 22 H 1.09001 * 109.46953 * 269.70260 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.69857 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.70488 * 1 2 3 25 25 H 1.07994 * 122.45085 * 359.97438 * 3 2 1 26 26 H 1.07997 * 124.52341 * 180.21728 * 4 3 2 27 27 H 1.08999 * 109.47549 * 300.00261 * 10 9 7 28 28 H 1.09007 * 109.47175 * 59.99964 * 10 9 7 29 29 H 1.08996 * 109.47498 * 185.00095 * 11 10 9 30 30 H 1.09006 * 109.47048 * 305.00201 * 11 10 9 31 31 H 1.09007 * 109.46768 * 299.99313 * 13 12 11 32 32 H 1.08995 * 109.47815 * 59.99349 * 13 12 11 33 33 H 0.97002 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2625 1.1478 0.0000 4 6 3.5873 0.9558 0.0049 5 16 3.9629 -0.7086 -0.0037 6 6 2.2589 -1.1423 -0.0059 7 6 1.7300 -2.5072 -0.0137 8 8 0.5281 -2.6937 -0.0148 9 8 2.5756 -3.5582 -0.0186 10 6 1.9808 -4.8828 -0.0256 11 6 3.0878 -5.9390 -0.0310 12 8 3.8253 -5.8623 1.1906 13 6 4.8892 -6.8113 1.2878 14 6 5.5945 -6.6417 2.6088 15 1 5.2636 -5.8845 3.3043 16 6 6.6622 -7.4530 2.9294 17 7 7.0653 -8.3746 2.0822 18 14 7.5368 -7.2423 4.5665 19 1 6.5731 -7.4630 5.6746 20 1 8.6424 -8.2286 4.6676 21 1 8.0905 -5.8676 4.6585 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3634 0.8927 -0.5091 24 1 -0.3633 -0.8873 -0.5184 25 1 1.8199 2.1328 -0.0004 26 1 4.3207 1.7486 0.0089 27 1 1.3627 -5.0084 0.8634 28 1 1.3637 -4.9993 -0.9166 29 1 2.6440 -6.9300 -0.1258 30 1 3.7577 -5.7589 -0.8718 31 1 4.4830 -7.8206 1.2202 32 1 5.5964 -6.6490 0.4744 33 1 7.8162 -8.9457 2.3080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:01 Heat of formation + Delta-G solvation = -106.864283 kcal Electronic energy + Delta-G solvation = -17661.779323 eV Core-core repulsion = 14586.498202 eV Total energy + Delta-G solvation = -3075.281121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28834 -38.34867 -36.93103 -35.90851 -32.77200 -31.19457 -30.28159 -28.45914 -26.88015 -24.00431 -22.81746 -22.32064 -21.51261 -18.91436 -18.51777 -16.77842 -16.50134 -16.41145 -15.77253 -15.35967 -14.93894 -14.61087 -14.30483 -13.97845 -13.53652 -13.31141 -12.84092 -12.62653 -12.52871 -12.26698 -11.97233 -11.92694 -11.43597 -10.93475 -10.91329 -10.83271 -10.74787 -10.40775 -10.30045 -10.04768 -9.14174 -9.03874 -8.87383 -8.56751 -8.21270 -6.11739 -4.13430 0.28597 1.38345 1.82983 2.11947 2.74208 2.89615 3.32471 3.34910 3.39031 4.32528 4.65675 4.70966 4.82695 4.98672 5.13034 5.22429 5.24845 5.36145 5.46279 5.56191 5.72571 5.81244 5.86095 5.91123 6.03907 6.15902 6.24331 6.59786 7.05263 7.39779 7.77822 7.81229 8.12624 8.52449 8.98871 9.51285 10.99814 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.004026 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.786795 B = 6953.877368 C = 7740.807820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.017 4.017 3 C -0.156 4.156 4 C -0.237 4.237 5 S 0.268 5.732 6 C -0.270 4.270 7 C 0.539 3.461 8 O -0.505 6.505 9 O -0.339 6.339 10 C 0.077 3.923 11 C 0.061 3.939 12 O -0.391 6.391 13 C 0.195 3.805 14 C -0.516 4.516 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.170 0.830 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 17.263 -7.072 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.032 4.032 3 C -0.188 4.188 4 C -0.375 4.375 5 S 0.538 5.462 6 C -0.388 4.388 7 C 0.384 3.616 8 O -0.397 6.397 9 O -0.255 6.255 10 C 0.004 3.996 11 C -0.016 4.016 12 O -0.311 6.311 13 C 0.120 3.880 14 C -0.554 4.554 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.162 0.838 26 H 0.188 0.812 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.274 16.309 -6.950 19.564 hybrid contribution -0.719 0.657 0.609 1.149 sum -8.994 16.966 -6.341 20.222 Atomic orbital electron populations 1.20766 0.88705 1.03858 1.03227 1.19516 0.97814 0.90159 0.95743 1.19826 0.92566 0.99413 1.06966 1.25575 1.00858 1.03393 1.07653 1.83739 1.02308 0.95440 1.64672 1.23471 0.98786 0.94267 1.22325 1.19589 0.84555 0.84541 0.72935 1.90807 1.15766 1.86119 1.46991 1.86683 1.39654 1.15627 1.83502 1.23249 0.96041 0.77644 1.02716 1.22330 0.93423 0.95349 0.90536 1.87922 1.48034 1.60454 1.34657 1.20235 0.83549 0.86613 0.97560 1.21015 1.14069 1.18452 1.01847 0.91551 1.24940 0.96752 0.94891 0.97831 1.69951 1.27300 1.20707 1.35866 0.86388 0.78933 0.78001 0.83125 1.19999 1.21138 1.19962 0.90478 0.91465 0.89049 0.83779 0.81218 0.90301 0.90257 0.91797 0.93153 0.97612 0.97471 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.55 36.01 0.34 -0.77 16 2 C -0.02 -0.20 5.91 -105.46 -0.62 -0.82 16 3 C -0.16 -1.50 9.97 -41.42 -0.41 -1.92 16 4 C -0.24 -2.20 10.92 29.20 0.32 -1.89 16 5 S 0.27 3.23 22.92 -107.50 -2.46 0.76 16 6 C -0.27 -3.79 6.45 -36.84 -0.24 -4.02 16 7 C 0.54 8.80 7.92 34.01 0.27 9.07 16 8 O -0.51 -8.61 14.04 -19.37 -0.27 -8.88 16 9 O -0.34 -5.96 10.05 -43.82 -0.44 -6.40 16 10 C 0.08 1.25 5.86 37.16 0.22 1.47 16 11 C 0.06 1.13 6.33 37.16 0.24 1.37 16 12 O -0.39 -9.55 10.30 -38.79 -0.40 -9.95 16 13 C 0.19 5.34 5.69 36.01 0.20 5.55 16 14 C -0.52 -15.27 9.43 -34.44 -0.32 -15.60 16 15 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 18 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.09 1.11 6.01 -51.93 -0.31 0.79 16 25 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 26 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -32.91 308.32 -7.40 -40.31 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -4.08 Total: -5.22 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.11 Total: -6.01 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.11 Total: -25.23 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.46 Total: 0.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.91 -7.40 -40.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.550 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds