Wall clock time and date at job start Mon Mar 30 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47609 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47070 * 299.99845 * 3 2 1 6 6 H 1.48503 * 109.47470 * 59.99499 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00155 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99560 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47183 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.46837 * 65.00044 * 12 11 10 14 14 C 1.34226 * 116.99798 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 13 18 18 C 1.33393 * 125.20065 * 89.99813 * 17 16 14 19 19 C 1.38425 * 114.92007 * 179.97438 * 18 17 16 20 20 C 1.33389 * 114.92135 * 0.02562 * 19 18 17 21 21 S 1.75882 * 125.20483 * 269.69667 * 17 16 14 22 22 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46688 * 60.00381 * 9 7 2 24 24 H 1.09000 * 109.46904 * 300.00237 * 9 7 2 25 25 H 1.09000 * 109.47079 * 60.00260 * 11 10 9 26 26 H 1.09004 * 109.47625 * 300.00005 * 11 10 9 27 27 H 1.08993 * 109.46973 * 304.99981 * 12 11 10 28 28 H 1.09000 * 109.47218 * 185.00081 * 12 11 10 29 29 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 30 30 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 31 31 H 1.08005 * 122.54147 * 359.96383 * 18 17 16 32 32 H 1.07995 * 122.53675 * 180.02562 * 19 18 17 33 33 H 1.07999 * 125.20519 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8753 0.0019 12 6 2.6484 -5.9561 0.0023 13 8 3.3996 -5.8880 1.2430 14 6 4.3937 -6.7756 1.4029 15 8 4.6286 -7.5825 0.5347 16 6 5.2175 -6.7651 2.6648 17 6 6.2592 -7.8519 2.5937 18 6 7.4883 -7.7075 2.0961 19 6 8.2718 -8.8479 2.1370 20 6 7.6787 -9.9186 2.6673 21 16 6.0427 -9.5026 3.1611 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8920 25 1 0.9448 -4.9825 -0.8878 26 1 0.9455 -4.9823 0.8922 27 1 3.3218 -5.7958 -0.8396 28 1 2.1824 -6.9375 -0.0869 29 1 4.5690 -6.9385 3.5235 30 1 5.7087 -5.7978 2.7699 31 1 7.8452 -6.7717 1.6918 32 1 9.2864 -8.8692 1.7675 33 1 8.1351 -10.8908 2.7809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:25 Heat of formation + Delta-G solvation = -104.869702 kcal Electronic energy + Delta-G solvation = -17339.303277 eV Core-core repulsion = 14264.108647 eV Total energy + Delta-G solvation = -3075.194630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37829 -38.07157 -37.02256 -35.99610 -32.81849 -32.57152 -30.12385 -27.60162 -26.84842 -23.87336 -22.53356 -22.18524 -20.97706 -19.45673 -17.71858 -17.40342 -16.59839 -16.53588 -16.03565 -15.62162 -15.37839 -14.65077 -14.34190 -13.71923 -13.63958 -13.17156 -12.97190 -12.71849 -12.63349 -12.43666 -11.93959 -11.78072 -11.44326 -10.96485 -10.93257 -10.88668 -10.75530 -10.43276 -10.37548 -10.05993 -9.12985 -8.92839 -8.88407 -8.64123 -8.23047 -6.13456 -4.15137 0.73488 1.41349 1.78365 2.26232 2.45543 2.94024 3.28064 3.34576 3.41115 4.31247 4.34316 4.69727 4.82981 4.85062 4.93290 5.21545 5.22437 5.23289 5.37845 5.38817 5.45458 5.85342 5.89333 5.91718 6.04902 6.08997 6.26200 6.58991 7.03954 7.38258 7.76779 7.83910 8.10997 8.50763 8.97798 9.49797 10.98180 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.003051 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.264633 B = 9176.231724 C = 9702.988683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.340 6.340 14 C 0.460 3.540 15 O -0.506 6.506 16 C -0.044 4.044 17 C -0.167 4.167 18 C -0.122 4.122 19 C -0.133 4.133 20 C -0.213 4.213 21 S 0.108 5.892 22 H 0.264 0.736 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.857 -18.573 6.655 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.302 3.698 15 O -0.394 6.394 16 C -0.083 4.083 17 C -0.285 4.285 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.348 4.348 21 S 0.372 5.628 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.761 -19.456 7.050 23.324 hybrid contribution 1.139 1.503 -0.889 2.085 sum 11.900 -17.952 6.161 22.402 Atomic orbital electron populations 1.69967 1.06116 1.27113 1.50604 1.24955 0.94992 0.99482 0.95112 0.86273 0.80030 0.82507 0.77637 1.19452 1.20838 1.20797 1.21089 0.94139 0.89279 1.50753 0.91446 1.20245 0.88756 0.83513 0.95523 1.87915 1.35330 1.12616 1.95228 1.22327 0.93251 0.85457 1.00584 1.23222 0.93652 0.98780 0.84200 1.86588 1.43390 1.53963 1.41672 1.23421 0.79298 0.78335 0.88781 1.90668 1.67534 1.37921 1.43273 1.19748 0.94702 0.98908 0.94986 1.23811 0.98491 0.97683 1.08470 1.20157 0.93270 1.00374 1.01469 1.20144 1.01551 0.92166 1.02528 1.25617 0.97796 1.03300 1.08116 1.84208 1.13413 1.04738 1.60457 0.92668 0.97604 0.97465 0.91920 0.93174 0.90474 0.90431 0.86556 0.85429 0.84080 0.84181 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.29 5.69 36.01 0.20 5.49 16 10 O -0.39 -9.46 10.30 -38.80 -0.40 -9.86 16 11 C 0.06 1.12 6.33 37.16 0.24 1.36 16 12 C 0.07 1.19 5.85 37.16 0.22 1.41 16 13 O -0.34 -5.59 10.19 -42.01 -0.43 -6.02 16 14 C 0.46 6.70 7.95 36.01 0.29 6.98 16 15 O -0.51 -8.49 15.78 -18.75 -0.30 -8.79 16 16 C -0.04 -0.47 6.31 -29.03 -0.18 -0.65 16 17 C -0.17 -1.84 5.00 -36.00 -0.18 -2.02 16 18 C -0.12 -1.28 10.05 -41.21 -0.41 -1.70 16 19 C -0.13 -1.24 10.18 -41.21 -0.42 -1.66 16 20 C -0.21 -1.89 11.23 29.04 0.33 -1.57 16 21 S 0.11 1.08 23.33 -107.50 -2.51 -1.43 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 29 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -33.68 312.63 -7.75 -41.42 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -4.19 Total: -4.41 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.35 Total: -6.32 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -1.12 Total: -24.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.68 -7.75 -41.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.446 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds