Wall clock time and date at job start Mon Mar 30 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47609 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47070 * 299.99845 * 3 2 1 6 6 H 1.48503 * 109.47470 * 59.99499 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00155 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99560 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47183 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.46837 * 65.00044 * 12 11 10 14 14 C 1.34226 * 116.99798 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 13 18 18 C 1.33393 * 125.20065 * 89.99813 * 17 16 14 19 19 C 1.38425 * 114.92007 * 179.97438 * 18 17 16 20 20 C 1.33389 * 114.92135 * 0.02562 * 19 18 17 21 21 S 1.75882 * 125.20483 * 269.69667 * 17 16 14 22 22 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46688 * 60.00381 * 9 7 2 24 24 H 1.09000 * 109.46904 * 300.00237 * 9 7 2 25 25 H 1.09000 * 109.47079 * 60.00260 * 11 10 9 26 26 H 1.09004 * 109.47625 * 300.00005 * 11 10 9 27 27 H 1.08993 * 109.46973 * 304.99981 * 12 11 10 28 28 H 1.09000 * 109.47218 * 185.00081 * 12 11 10 29 29 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 30 30 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 31 31 H 1.08005 * 122.54147 * 359.96383 * 18 17 16 32 32 H 1.07995 * 122.53675 * 180.02562 * 19 18 17 33 33 H 1.07999 * 125.20519 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8753 0.0019 12 6 2.6484 -5.9561 0.0023 13 8 3.3996 -5.8880 1.2430 14 6 4.3937 -6.7756 1.4029 15 8 4.6286 -7.5825 0.5347 16 6 5.2175 -6.7651 2.6648 17 6 6.2592 -7.8519 2.5937 18 6 7.4883 -7.7075 2.0961 19 6 8.2718 -8.8479 2.1370 20 6 7.6787 -9.9186 2.6673 21 16 6.0427 -9.5026 3.1611 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8920 25 1 0.9448 -4.9825 -0.8878 26 1 0.9455 -4.9823 0.8922 27 1 3.3218 -5.7958 -0.8396 28 1 2.1824 -6.9375 -0.0869 29 1 4.5690 -6.9385 3.5235 30 1 5.7087 -5.7978 2.7699 31 1 7.8452 -6.7717 1.6918 32 1 9.2864 -8.8692 1.7675 33 1 8.1351 -10.8908 2.7809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815173443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:25 Heat of formation + Delta-G solvation = -125.144181 kcal Electronic energy + Delta-G solvation = -17340.182444 eV Core-core repulsion = 14264.108647 eV Total energy + Delta-G solvation = -3076.073797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56272 -38.99743 -38.55631 -37.37821 -34.95163 -33.47365 -31.62205 -29.12478 -28.24546 -24.83030 -24.50280 -23.57028 -22.11420 -20.20033 -18.88939 -18.70576 -18.21123 -17.93186 -17.30435 -17.04015 -16.52651 -16.27210 -16.13539 -15.22150 -14.75580 -14.29987 -14.03882 -13.79280 -13.71315 -13.56592 -13.29813 -13.19081 -12.90183 -12.71931 -12.53706 -12.44325 -12.01654 -11.74408 -11.70685 -11.59497 -11.26847 -10.90558 -10.28030 -9.66947 -9.38958 -8.32717 -6.44869 -0.02490 0.67764 1.05582 1.13419 1.41087 1.42191 1.57004 1.57894 1.98080 2.34686 3.01408 3.05374 3.50119 3.79649 3.91882 4.09293 4.12787 4.23914 4.40584 4.46773 4.50210 4.63226 4.69883 4.72451 4.85122 5.17012 5.17074 5.33777 5.40705 5.54395 5.55204 5.94717 6.49142 6.67830 6.79344 7.26902 8.79764 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.003051 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.264633 B = 9176.231724 C = 9702.988683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.357 6.357 14 C 0.460 3.540 15 O -0.531 6.531 16 C -0.040 4.040 17 C -0.189 4.189 18 C -0.130 4.130 19 C -0.146 4.146 20 C -0.207 4.207 21 S 0.096 5.904 22 H 0.271 0.729 23 H -0.008 1.008 24 H -0.010 1.010 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.072 -18.617 7.056 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.273 6.273 14 C 0.304 3.696 15 O -0.421 6.421 16 C -0.078 4.078 17 C -0.306 4.306 18 C -0.161 4.161 19 C -0.176 4.176 20 C -0.343 4.343 21 S 0.360 5.640 22 H 0.080 0.920 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.973 -19.525 7.458 24.088 hybrid contribution 0.762 1.396 -1.018 1.888 sum 12.735 -18.130 6.440 23.073 Atomic orbital electron populations 1.70062 1.07705 1.28651 1.50488 1.25950 0.95980 1.03361 0.93889 0.85134 0.78651 0.77300 0.78303 1.18874 1.19681 1.19563 1.21418 0.94112 0.90892 1.52277 0.92117 1.19880 0.88574 0.84396 0.93900 1.87858 1.35525 1.14187 1.95331 1.22648 0.94490 0.83333 1.01849 1.23170 0.93118 0.99081 0.84100 1.86587 1.44163 1.54892 1.41697 1.24153 0.78629 0.77236 0.89607 1.90648 1.68112 1.38832 1.44483 1.19873 0.94589 0.99840 0.93539 1.23930 0.98831 0.98180 1.09694 1.20451 0.93435 1.01218 1.01016 1.20422 1.02581 0.91813 1.02768 1.25989 0.96943 1.04348 1.06987 1.84210 1.14650 1.04512 1.60672 0.91983 0.99063 0.99186 0.90098 0.92429 0.91163 0.87501 0.84452 0.83859 0.83483 0.82043 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.98 44.14 29.54 68.60 2.03 46.16 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -32.76 9.43 25.60 0.24 -32.52 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.59 5.69 71.24 0.41 11.99 16 10 O -0.41 -20.05 10.30 -145.57 -1.50 -21.55 16 11 C 0.05 1.94 6.33 71.98 0.46 2.39 16 12 C 0.08 2.45 5.85 71.98 0.42 2.88 16 13 O -0.36 -11.55 10.19 -48.74 -0.50 -12.05 16 14 C 0.46 13.10 7.95 71.24 0.57 13.66 16 15 O -0.53 -17.58 15.78 21.97 0.35 -17.23 16 16 C -0.04 -0.80 6.31 29.10 0.18 -0.62 16 17 C -0.19 -3.97 5.00 24.59 0.12 -3.85 16 18 C -0.13 -2.59 10.05 21.22 0.21 -2.37 16 19 C -0.15 -2.45 10.18 21.22 0.22 -2.24 16 20 C -0.21 -3.29 11.23 66.72 0.75 -2.54 16 21 S 0.10 1.80 23.33 -56.49 -1.32 0.49 16 22 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 28 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 29 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -71.85 312.63 4.48 -67.37 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.10 Total: 4.37 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.04 Total: -12.36 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.65 Total: -50.83 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.49 kcal Total: -71.85 4.48 -67.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.776 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds