Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32744 * 123.45453 * 2 1 4 4 S 1.75502 * 110.60052 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.45204 * 359.97438 * 4 3 2 6 6 C 1.36107 * 110.81088 * 0.02562 * 5 4 3 7 7 C 1.47026 * 123.47495 * 180.02562 * 6 5 4 8 8 O 1.21563 * 119.99942 * 179.97438 * 7 6 5 9 9 O 1.34797 * 120.00442 * 359.96345 * 7 6 5 10 10 C 1.45194 * 117.00358 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.42907 * 109.46975 * 65.00283 * 11 10 9 13 13 C 1.42903 * 113.99777 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46488 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99688 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47300 * 119.99744 * 18 16 14 21 21 H 1.48498 * 109.47256 * 239.99958 * 18 16 14 22 22 H 1.08997 * 109.47237 * 89.97414 * 1 2 3 23 23 H 1.08997 * 109.47072 * 209.97460 * 1 2 3 24 24 H 1.09002 * 109.47385 * 329.97563 * 1 2 3 25 25 H 1.08004 * 124.69916 * 359.75605 * 3 2 1 26 26 H 1.08006 * 124.59569 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47131 * 299.99801 * 10 9 7 28 28 H 1.09006 * 109.47117 * 59.99902 * 10 9 7 29 29 H 1.09003 * 109.47260 * 184.99810 * 11 10 9 30 30 H 1.08996 * 109.47515 * 305.00295 * 11 10 9 31 31 H 1.09001 * 109.47158 * 299.99398 * 13 12 11 32 32 H 1.08992 * 109.47286 * 60.00173 * 13 12 11 33 33 H 0.97002 * 120.00310 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2388 1.1075 0.0000 4 16 3.9498 0.7171 -0.0007 5 6 3.6421 -0.9594 -0.0003 6 6 2.3034 -1.2053 -0.0002 7 6 1.7274 -2.5580 0.0008 8 8 0.5206 -2.7047 0.0013 9 8 2.5373 -3.6355 0.0008 10 6 1.8993 -4.9398 0.0024 11 6 2.9709 -6.0318 0.0015 12 8 3.7125 -5.9723 1.2217 13 6 4.7441 -6.9560 1.3234 14 6 5.4566 -6.8019 2.6423 15 1 5.1525 -6.0299 3.3335 16 6 6.4976 -7.6460 2.9661 17 7 6.8684 -8.5859 2.1243 18 14 7.3814 -7.4547 4.6007 19 1 6.7771 -6.3318 5.3617 20 1 7.2510 -8.7096 5.3839 21 1 8.8184 -7.1709 4.3562 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5142 25 1 1.8369 2.1100 -0.0038 26 1 4.4058 -1.7231 -0.0001 27 1 1.2789 -5.0397 0.8930 28 1 1.2772 -5.0410 -0.8870 29 1 2.4946 -7.0082 -0.0869 30 1 3.6450 -5.8787 -0.8411 31 1 4.3042 -7.9514 1.2626 32 1 5.4550 -6.8225 0.5081 33 1 7.6005 -9.1800 2.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -109.676957 kcal Electronic energy + Delta-G solvation = -17676.487193 eV Core-core repulsion = 14601.084105 eV Total energy + Delta-G solvation = -3075.403088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33527 -37.91565 -36.83509 -35.87933 -32.79255 -31.55336 -29.98059 -27.90741 -26.93050 -24.81106 -22.61796 -22.26099 -21.25458 -18.97555 -17.87477 -17.39880 -16.52212 -16.46277 -15.99839 -15.33505 -14.65069 -14.39392 -14.19193 -13.95539 -13.42124 -13.33933 -12.88808 -12.81155 -12.55213 -12.21176 -12.07570 -11.93613 -11.44593 -11.08068 -10.92026 -10.88048 -10.74538 -10.36629 -10.23625 -10.04315 -9.13121 -9.10224 -8.89660 -8.58130 -8.23115 -6.13610 -4.15285 0.56539 1.33428 1.69679 1.71446 2.82086 3.07922 3.27855 3.34418 3.41129 4.31397 4.54159 4.71402 4.89555 4.98845 5.22446 5.23133 5.26033 5.35545 5.46570 5.56913 5.58559 5.79776 5.86378 5.91889 6.03943 6.07352 6.29418 6.64674 7.03752 7.37988 7.76863 7.89346 8.10898 8.50821 8.97841 9.49714 10.97991 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.003884 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.951337 B = 7206.598272 C = 8090.026545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.048 4.048 3 C -0.252 4.252 4 S 0.194 5.806 5 C -0.171 4.171 6 C -0.152 4.152 7 C 0.527 3.473 8 O -0.511 6.511 9 O -0.338 6.338 10 C 0.076 3.924 11 C 0.061 3.939 12 O -0.391 6.391 13 C 0.194 3.806 14 C -0.515 4.515 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.170 0.830 26 H 0.185 0.815 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 17.968 -7.115 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.059 4.059 3 C -0.387 4.387 4 S 0.461 5.539 5 C -0.309 4.309 6 C -0.167 4.167 7 C 0.371 3.629 8 O -0.402 6.402 9 O -0.254 6.254 10 C 0.003 3.997 11 C -0.016 4.016 12 O -0.311 6.311 13 C 0.120 3.880 14 C -0.553 4.553 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.187 0.813 26 H 0.202 0.798 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.856 18.755 -6.984 21.500 hybrid contribution -0.679 -1.325 0.549 1.587 sum -8.535 17.430 -6.435 20.446 Atomic orbital electron populations 1.20677 0.88604 1.03829 1.02935 1.19797 0.97497 0.89595 0.98994 1.25261 0.96580 1.02506 1.14307 1.83087 1.05369 0.96758 1.68721 1.26033 1.00181 1.02917 1.01788 1.19348 0.92378 0.91261 1.13750 1.20365 0.84803 0.85015 0.72723 1.90772 1.15512 1.87118 1.46811 1.86649 1.40205 1.15183 1.83321 1.23226 0.95500 0.78358 1.02649 1.22330 0.93662 0.95145 0.90485 1.87924 1.49839 1.58380 1.34943 1.20244 0.84289 0.85961 0.97541 1.21091 1.15502 1.16623 1.02068 0.91458 1.24948 0.96777 0.94900 0.97847 1.69969 1.28830 1.19056 1.35938 0.86282 0.79203 0.78162 0.82873 1.19455 1.20805 1.20798 0.90941 0.89054 0.91674 0.81274 0.79808 0.90380 0.90332 0.91852 0.93214 0.97588 0.97502 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.55 36.01 0.34 -0.72 16 2 C -0.05 -0.57 6.01 -104.05 -0.63 -1.19 16 3 C -0.25 -2.36 10.91 28.85 0.31 -2.04 16 4 S 0.19 1.77 23.02 -107.50 -2.47 -0.70 16 5 C -0.17 -2.08 10.56 29.97 0.32 -1.76 16 6 C -0.15 -2.09 5.98 -104.65 -0.63 -2.72 16 7 C 0.53 8.53 7.92 34.29 0.27 8.80 16 8 O -0.51 -8.71 14.00 -19.32 -0.27 -8.98 16 9 O -0.34 -5.86 9.84 -43.54 -0.43 -6.28 16 10 C 0.08 1.23 5.86 37.16 0.22 1.45 16 11 C 0.06 1.13 6.33 37.16 0.24 1.36 16 12 O -0.39 -9.52 10.30 -38.80 -0.40 -9.92 16 13 C 0.19 5.31 5.69 36.01 0.20 5.51 16 14 C -0.51 -15.21 9.43 -34.44 -0.32 -15.53 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 1.14 6.02 -51.93 -0.31 0.83 16 24 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 25 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 26 H 0.18 2.22 8.02 -52.48 -0.42 1.80 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -32.84 308.32 -7.06 -39.90 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -4.08 Total: -4.09 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 0.23 Total: -5.31 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.10 Total: -25.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.47 Total: -0.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.84 -7.06 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.775 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds