Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32744 * 123.45453 * 2 1 4 4 S 1.75502 * 110.60052 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.45204 * 359.97438 * 4 3 2 6 6 C 1.36107 * 110.81088 * 0.02562 * 5 4 3 7 7 C 1.47026 * 123.47495 * 180.02562 * 6 5 4 8 8 O 1.21563 * 119.99942 * 179.97438 * 7 6 5 9 9 O 1.34797 * 120.00442 * 359.96345 * 7 6 5 10 10 C 1.45194 * 117.00358 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.42907 * 109.46975 * 65.00283 * 11 10 9 13 13 C 1.42903 * 113.99777 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46488 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99688 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47300 * 119.99744 * 18 16 14 21 21 H 1.48498 * 109.47256 * 239.99958 * 18 16 14 22 22 H 1.08997 * 109.47237 * 89.97414 * 1 2 3 23 23 H 1.08997 * 109.47072 * 209.97460 * 1 2 3 24 24 H 1.09002 * 109.47385 * 329.97563 * 1 2 3 25 25 H 1.08004 * 124.69916 * 359.75605 * 3 2 1 26 26 H 1.08006 * 124.59569 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47131 * 299.99801 * 10 9 7 28 28 H 1.09006 * 109.47117 * 59.99902 * 10 9 7 29 29 H 1.09003 * 109.47260 * 184.99810 * 11 10 9 30 30 H 1.08996 * 109.47515 * 305.00295 * 11 10 9 31 31 H 1.09001 * 109.47158 * 299.99398 * 13 12 11 32 32 H 1.08992 * 109.47286 * 60.00173 * 13 12 11 33 33 H 0.97002 * 120.00310 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2388 1.1075 0.0000 4 16 3.9498 0.7171 -0.0007 5 6 3.6421 -0.9594 -0.0003 6 6 2.3034 -1.2053 -0.0002 7 6 1.7274 -2.5580 0.0008 8 8 0.5206 -2.7047 0.0013 9 8 2.5373 -3.6355 0.0008 10 6 1.8993 -4.9398 0.0024 11 6 2.9709 -6.0318 0.0015 12 8 3.7125 -5.9723 1.2217 13 6 4.7441 -6.9560 1.3234 14 6 5.4566 -6.8019 2.6423 15 1 5.1525 -6.0299 3.3335 16 6 6.4976 -7.6460 2.9661 17 7 6.8684 -8.5859 2.1243 18 14 7.3814 -7.4547 4.6007 19 1 6.7771 -6.3318 5.3617 20 1 7.2510 -8.7096 5.3839 21 1 8.8184 -7.1709 4.3562 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5142 25 1 1.8369 2.1100 -0.0038 26 1 4.4058 -1.7231 -0.0001 27 1 1.2789 -5.0397 0.8930 28 1 1.2772 -5.0410 -0.8870 29 1 2.4946 -7.0082 -0.0869 30 1 3.6450 -5.8787 -0.8411 31 1 4.3042 -7.9514 1.2626 32 1 5.4550 -6.8225 0.5081 33 1 7.6005 -9.1800 2.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815216800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -129.803901 kcal Electronic energy + Delta-G solvation = -17677.359963 eV Core-core repulsion = 14601.084105 eV Total energy + Delta-G solvation = -3076.275858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54782 -39.06693 -38.40303 -37.24707 -34.96753 -32.54848 -31.44270 -29.13785 -28.62809 -25.89467 -24.58351 -23.75400 -22.42150 -19.98264 -18.86753 -18.62872 -18.48332 -17.93550 -17.24049 -17.03208 -16.40822 -16.19846 -15.43683 -14.96178 -14.78907 -14.23932 -14.17638 -14.08379 -13.79904 -13.56250 -13.24081 -13.07232 -12.92569 -12.89820 -12.72668 -12.47087 -12.02845 -11.87952 -11.75087 -11.38862 -11.28658 -10.91925 -10.29839 -9.94507 -9.37681 -8.34153 -6.46481 -0.38627 0.52440 0.76134 0.90024 1.39517 1.40674 1.55471 1.64788 1.97454 2.33333 2.99836 3.03692 3.69696 3.77968 3.90424 4.07951 4.14995 4.37481 4.40140 4.47977 4.61009 4.63659 4.72532 4.81381 4.83110 4.96051 5.14945 5.24342 5.25542 5.52629 5.58575 5.93038 6.47409 6.66489 6.77599 7.25356 8.78308 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.003884 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.951337 B = 7206.598272 C = 8090.026545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.073 4.073 3 C -0.239 4.239 4 S 0.262 5.738 5 C -0.191 4.191 6 C -0.181 4.181 7 C 0.522 3.478 8 O -0.528 6.528 9 O -0.356 6.356 10 C 0.079 3.921 11 C 0.054 3.946 12 O -0.410 6.410 13 C 0.208 3.792 14 C -0.551 4.551 15 H 0.059 0.941 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.204 0.796 26 H 0.176 0.824 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.057 0.943 31 H -0.007 1.007 32 H -0.010 1.010 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 19.925 -6.656 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C -0.374 4.374 4 S 0.530 5.470 5 C -0.330 4.330 6 C -0.198 4.198 7 C 0.367 3.633 8 O -0.420 6.420 9 O -0.273 6.273 10 C 0.006 3.994 11 C -0.022 4.022 12 O -0.330 6.330 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.077 0.923 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.221 0.779 26 H 0.194 0.806 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.410 20.723 -6.545 22.961 hybrid contribution -0.812 -1.857 0.325 2.053 sum -8.221 18.866 -6.220 21.499 Atomic orbital electron populations 1.20638 0.88143 1.03712 1.03174 1.19921 0.98105 0.89415 1.00765 1.25700 0.96713 1.03316 1.11679 1.82865 1.04599 0.93356 1.66192 1.26169 0.99613 1.05298 1.01888 1.19497 0.93421 0.90665 1.16187 1.20864 0.84691 0.85548 0.72154 1.90751 1.16031 1.87381 1.47850 1.86640 1.41107 1.15810 1.83694 1.23214 0.94632 0.77685 1.03856 1.22649 0.93908 0.97279 0.88397 1.87871 1.49571 1.57535 1.38049 1.19883 0.84556 0.85925 0.96358 1.21406 1.17015 1.17356 1.03066 0.92305 1.25930 0.97100 0.94020 1.01928 1.70061 1.29287 1.19518 1.37931 0.85149 0.78067 0.78556 0.77715 1.19053 1.19543 1.19451 0.90554 0.91730 0.89141 0.77913 0.80633 0.90990 0.87234 0.89794 0.92523 0.98969 0.99200 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 9.55 71.24 0.68 -1.28 16 2 C -0.07 -1.61 6.01 -19.45 -0.12 -1.72 16 3 C -0.24 -3.77 10.91 66.64 0.73 -3.04 16 4 S 0.26 4.15 23.02 -56.49 -1.30 2.85 16 5 C -0.19 -4.58 10.56 67.32 0.71 -3.87 16 6 C -0.18 -5.03 5.98 -19.88 -0.12 -5.14 16 7 C 0.52 17.38 7.92 70.13 0.56 17.93 16 8 O -0.53 -18.49 14.00 19.63 0.27 -18.22 16 9 O -0.36 -12.70 9.84 -54.42 -0.54 -13.24 16 10 C 0.08 2.60 5.86 71.98 0.42 3.02 16 11 C 0.05 2.02 6.33 71.98 0.46 2.48 16 12 O -0.41 -20.54 10.30 -145.57 -1.50 -22.04 16 13 C 0.21 11.73 5.69 71.24 0.41 12.14 16 14 C -0.55 -33.20 9.43 25.60 0.24 -32.96 16 15 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 16 C 0.01 0.52 5.46 84.66 0.46 0.98 16 17 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 18 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.65 6.02 -2.39 -0.01 1.63 16 24 H 0.09 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 26 H 0.18 4.37 8.02 -2.91 -0.02 4.35 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.63 308.32 4.79 -66.84 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.11 Total: 4.13 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.42 Total: -11.48 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.76 Total: -53.50 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.30 Total: 2.85 kcal Total: -71.63 4.79 -66.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.959 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds