Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47167 * 240.00042 * 3 2 1 5 5 H 1.48502 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47359 * 119.99755 * 3 2 1 7 7 C 1.37879 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47430 * 180.02562 * 11 10 9 13 13 C 1.34681 * 117.00345 * 179.97438 * 12 11 10 14 14 O 1.21447 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.47990 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.39828 * 120.16945 * 180.02562 * 15 13 12 17 17 C 1.38715 * 117.91318 * 179.97438 * 16 15 13 18 18 C 1.38762 * 118.06848 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 119.98056 * 180.02562 * 18 17 16 20 20 N 1.32308 * 120.04202 * 0.02562 * 18 17 16 21 21 N 1.28358 * 122.27807 * 359.97438 * 20 18 17 22 22 H 0.96996 * 119.99980 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47670 * 59.99543 * 9 7 2 24 24 H 1.09003 * 109.47309 * 299.99078 * 9 7 2 25 25 H 1.09001 * 109.47495 * 59.99958 * 10 9 7 26 26 H 1.08993 * 109.47343 * 299.99704 * 10 9 7 27 27 H 1.09002 * 109.47430 * 59.99989 * 11 10 9 28 28 H 1.09006 * 109.47150 * 300.00074 * 11 10 9 29 29 H 1.08001 * 121.04839 * 0.02562 * 16 15 13 30 30 H 1.08002 * 120.96813 * 179.73246 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9091 -7.3353 0.0029 14 8 0.7051 -7.4944 0.0030 15 6 2.8106 -8.5089 0.0031 16 6 2.2800 -9.8026 0.0037 17 6 3.1677 -10.8685 0.0032 18 6 4.5264 -10.5867 0.0016 19 17 5.6812 -11.8829 0.0003 20 7 4.9424 -9.3308 0.0010 21 7 4.1277 -8.3388 0.0015 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8533 -5.0451 -0.8886 28 1 0.8539 -5.0446 0.8914 29 1 1.2126 -9.9669 0.0037 30 1 2.8117 -11.8882 0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815435008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -42.509675 kcal Electronic energy + Delta-G solvation = -16924.111115 eV Core-core repulsion = 13746.036569 eV Total energy + Delta-G solvation = -3178.074546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.75324 -40.13514 -37.50967 -36.74244 -34.06680 -33.89171 -33.07321 -31.66917 -27.47639 -26.05040 -25.30696 -23.38359 -21.72801 -20.39482 -18.94418 -17.99645 -17.57730 -16.92227 -16.68909 -16.11464 -15.67086 -14.95050 -14.47314 -14.22027 -14.13525 -13.47191 -12.80172 -12.36725 -12.22670 -12.18717 -12.08128 -11.92251 -11.00970 -10.96506 -10.94835 -10.67052 -10.58520 -10.48628 -10.35569 -10.30071 -9.74677 -9.53471 -9.18424 -8.38366 -6.03514 -4.06418 -0.33862 0.06076 0.94364 1.96834 2.33662 2.97736 3.33704 3.37659 3.39767 3.41542 3.71334 3.99617 4.09526 4.32064 4.45814 4.85416 5.08429 5.24328 5.32585 5.49516 5.50470 5.94102 6.25015 6.52240 6.72020 6.96380 7.51606 7.59600 7.69906 7.86386 7.94733 8.35742 8.99614 9.57960 11.07940 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.002774 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.641524 B =10090.906772 C =10689.800051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.110 4.110 11 C 0.066 3.934 12 O -0.328 6.328 13 C 0.524 3.476 14 O -0.491 6.491 15 C 0.043 3.957 16 C -0.046 4.046 17 C -0.110 4.110 18 C 0.128 3.872 19 Cl 0.005 6.995 20 N -0.226 5.226 21 N -0.154 5.154 22 H 0.262 0.738 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.177 0.823 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -25.803 0.012 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.147 4.147 11 C -0.007 4.007 12 O -0.243 6.243 13 C 0.364 3.636 14 O -0.378 6.378 15 C -0.101 4.101 16 C -0.075 4.075 17 C -0.139 4.139 18 C -0.041 4.041 19 Cl 0.034 6.966 20 N -0.072 5.072 21 N -0.002 5.002 22 H 0.072 0.928 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.195 0.805 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.671 -24.725 0.010 25.609 hybrid contribution -0.776 -0.197 0.001 0.801 sum 5.895 -24.923 0.011 25.610 Atomic orbital electron populations 1.69947 1.06095 1.26896 1.50512 1.25022 0.94880 0.99366 0.95161 0.86599 0.79529 0.82824 0.78722 1.20153 1.21282 1.20147 1.21139 0.93160 0.90640 1.51089 0.92393 1.19050 0.93791 0.90676 0.97690 1.21796 1.00007 0.90544 1.02390 1.23717 0.91162 0.83251 1.02526 1.86678 1.42002 1.13911 1.81673 1.20147 0.85805 0.83733 0.73886 1.90885 1.14856 1.86831 1.45243 1.22054 0.93128 0.93205 1.01721 1.22510 1.03484 0.90031 0.91467 1.22261 0.90936 1.02368 0.98342 1.23870 0.90643 0.92235 0.97342 1.98454 1.59337 1.42941 1.95906 1.73289 1.28887 0.95540 1.09534 1.73696 1.00819 1.21748 1.03911 0.92832 0.96203 0.96194 0.91865 0.91859 0.91006 0.91012 0.80539 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.27 5.53 -26.73 -0.15 -2.41 16 11 C 0.07 1.18 5.47 37.16 0.20 1.39 16 12 O -0.33 -5.56 10.05 -40.44 -0.41 -5.97 16 13 C 0.52 7.77 7.95 34.73 0.28 8.05 16 14 O -0.49 -7.78 16.18 -19.23 -0.31 -8.10 16 15 C 0.04 0.53 6.83 -82.86 -0.57 -0.04 16 16 C -0.05 -0.37 9.73 -38.81 -0.38 -0.75 16 17 C -0.11 -0.69 9.99 -39.21 -0.39 -1.08 16 18 C 0.13 1.14 7.37 -17.15 -0.13 1.01 16 19 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 20 N -0.23 -2.79 11.50 32.93 0.38 -2.41 16 21 N -0.15 -2.12 11.31 33.31 0.38 -1.74 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.18 1.02 7.72 -52.49 -0.41 0.61 16 30 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -31.89 295.40 -5.89 -37.78 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -2.90 Total: -6.31 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.68 Total: -6.81 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 1.49 Total: -30.17 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.72 Total: -14.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.51 Total: -1.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.89 -5.89 -37.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815435008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.730 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds