Wall clock time and date at job start Mon Mar 30 2020 00:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47167 * 240.00042 * 3 2 1 5 5 H 1.48502 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47359 * 119.99755 * 3 2 1 7 7 C 1.37879 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47430 * 180.02562 * 11 10 9 13 13 C 1.34681 * 117.00345 * 179.97438 * 12 11 10 14 14 O 1.21447 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.47990 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.39828 * 120.16945 * 180.02562 * 15 13 12 17 17 C 1.38715 * 117.91318 * 179.97438 * 16 15 13 18 18 C 1.38762 * 118.06848 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 119.98056 * 180.02562 * 18 17 16 20 20 N 1.32308 * 120.04202 * 0.02562 * 18 17 16 21 21 N 1.28358 * 122.27807 * 359.97438 * 20 18 17 22 22 H 0.96996 * 119.99980 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47670 * 59.99543 * 9 7 2 24 24 H 1.09003 * 109.47309 * 299.99078 * 9 7 2 25 25 H 1.09001 * 109.47495 * 59.99958 * 10 9 7 26 26 H 1.08993 * 109.47343 * 299.99704 * 10 9 7 27 27 H 1.09002 * 109.47430 * 59.99989 * 11 10 9 28 28 H 1.09006 * 109.47150 * 300.00074 * 11 10 9 29 29 H 1.08001 * 121.04839 * 0.02562 * 16 15 13 30 30 H 1.08002 * 120.96813 * 179.73246 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9091 -7.3353 0.0029 14 8 0.7051 -7.4944 0.0030 15 6 2.8106 -8.5089 0.0031 16 6 2.2800 -9.8026 0.0037 17 6 3.1677 -10.8685 0.0032 18 6 4.5264 -10.5867 0.0016 19 17 5.6812 -11.8829 0.0003 20 7 4.9424 -9.3308 0.0010 21 7 4.1277 -8.3388 0.0015 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8533 -5.0451 -0.8886 28 1 0.8539 -5.0446 0.8914 29 1 1.2126 -9.9669 0.0037 30 1 2.8117 -11.8882 0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815435008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:37 Heat of formation + Delta-G solvation = -62.502232 kcal Electronic energy + Delta-G solvation = -16924.978057 eV Core-core repulsion = 13746.036569 eV Total energy + Delta-G solvation = -3178.941488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.59486 -41.30586 -38.17151 -38.02219 -35.96805 -34.61855 -34.05016 -33.50309 -29.19584 -27.17022 -26.07473 -25.09899 -22.89008 -22.18069 -19.96678 -18.81849 -18.54913 -18.36982 -17.92012 -17.79794 -16.61488 -16.49521 -15.66546 -15.61389 -15.02008 -14.64214 -14.14826 -13.96815 -13.82022 -13.40553 -13.16001 -12.81847 -12.71899 -12.54780 -12.43717 -12.12585 -12.06705 -11.68206 -11.50785 -11.44623 -11.26719 -11.09497 -11.04738 -10.56105 -8.21534 -6.32577 -1.13412 -0.59729 0.28081 0.95309 1.22564 1.42064 1.44817 1.52872 2.12441 2.41165 2.56728 3.00411 3.12386 3.28752 3.44033 3.53771 3.99049 3.99248 4.10916 4.39573 4.51203 4.67143 4.79207 4.79657 5.04653 5.21420 5.49125 5.64682 5.80730 6.19042 6.32242 6.82688 7.05320 7.36682 8.90380 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.002774 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.641524 B =10090.906772 C =10689.800051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.096 4.096 11 C 0.076 3.924 12 O -0.340 6.340 13 C 0.526 3.474 14 O -0.504 6.504 15 C 0.026 3.974 16 C -0.035 4.035 17 C -0.081 4.081 18 C 0.124 3.876 19 Cl 0.023 6.977 20 N -0.258 5.258 21 N -0.191 5.191 22 H 0.265 0.735 23 H 0.000 1.000 24 H 0.000 1.000 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.203 0.797 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -27.617 0.015 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.134 4.134 11 C 0.003 3.997 12 O -0.255 6.255 13 C 0.368 3.632 14 O -0.391 6.391 15 C -0.119 4.119 16 C -0.063 4.063 17 C -0.110 4.110 18 C -0.045 4.045 19 Cl 0.051 6.949 20 N -0.104 5.104 21 N -0.039 5.039 22 H 0.074 0.926 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.220 0.780 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.290 -26.561 0.012 27.543 hybrid contribution -0.935 0.184 0.000 0.953 sum 6.355 -26.377 0.013 27.132 Atomic orbital electron populations 1.70075 1.07759 1.28004 1.51372 1.25967 0.95795 1.03367 0.94585 0.85476 0.78251 0.77960 0.79231 1.19171 1.20777 1.19159 1.21601 0.93703 0.92025 1.51019 0.91934 1.18917 0.94155 0.92114 0.95725 1.21479 0.98868 0.90544 1.02511 1.23346 0.90706 0.82856 1.02795 1.86647 1.41807 1.14726 1.82293 1.20564 0.86204 0.83497 0.72972 1.90869 1.15450 1.86880 1.45949 1.21891 0.92636 0.93482 1.03867 1.22819 1.04998 0.88444 0.90067 1.22769 0.89171 1.04029 0.95058 1.24180 0.92289 0.91666 0.96368 1.98466 1.59116 1.41614 1.95705 1.73157 1.29255 0.96833 1.11145 1.73577 1.01634 1.23165 1.05523 0.92630 0.98146 0.98136 0.91692 0.91686 0.90782 0.90789 0.77951 0.76161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.05 5.53 30.59 0.17 -3.88 16 11 C 0.08 2.76 5.47 71.98 0.39 3.15 16 12 O -0.34 -11.62 10.05 -55.90 -0.56 -12.18 16 13 C 0.53 15.47 7.95 70.41 0.56 16.03 16 14 O -0.50 -15.65 16.18 20.01 0.32 -15.32 16 15 C 0.03 0.61 6.83 41.97 0.29 0.90 16 16 C -0.04 -0.47 9.73 22.77 0.22 -0.25 16 17 C -0.08 -0.72 9.99 22.51 0.22 -0.49 16 18 C 0.12 1.93 7.37 84.75 0.62 2.55 16 19 Cl 0.02 0.27 29.13 -2.72 -0.08 0.19 16 20 N -0.26 -6.18 11.50 -49.73 -0.57 -6.75 16 21 N -0.19 -5.25 11.31 -48.53 -0.55 -5.80 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.20 1.59 7.72 -2.91 -0.02 1.57 16 30 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -70.37 295.40 5.36 -65.00 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: 1.17 Total: -4.49 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 3.32 Total: -10.72 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.84 Total: -68.84 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.24 Total: -27.50 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -70.37 5.36 -65.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815435008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.502 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds